STRINGSTRING
Swoo_4312 Swoo_4312 Swoo_0008 Swoo_0008 Swoo_0161 Swoo_0161 Swoo_0564 Swoo_0564 Swoo_4880 Swoo_4880 Swoo_1736 Swoo_1736
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Swoo_4312PFAM: polysaccharide deacetylase; KEGG: btl:BALH_1738 polysaccharide deacetylase. (522 aa)
Swoo_0008LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. (246 aa)
Swoo_0161PFAM: polysaccharide deacetylase; KEGG: sse:Ssed_0181 polysaccharide deacetylase. (342 aa)
Swoo_0564PFAM: polysaccharide deacetylase; Carbohydrate-binding family V/XII; KEGG: vha:VIBHAR_03626 hypothetical protein. (424 aa)
Swoo_4880PFAM: protein of unknown function DUF610 YibQ; KEGG: sse:Ssed_4473 protein of unknown function DUF610, YibQ. (251 aa)
Swoo_1736LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. (242 aa)
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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