STRINGSTRING
Swoo_2101 Swoo_2101 Swoo_0692 Swoo_0692 Swoo_1130 Swoo_1130 gshA gshA Swoo_4643 Swoo_4643
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Swoo_2101PFAM: glutamine synthetase catalytic region; KEGG: sse:Ssed_2532 hypothetical protein. (455 aa)
Swoo_0692PFAM: CBS domain containing protein; KEGG: scl:sce0051 hypothetical protein. (636 aa)
Swoo_1130Glutamate--putrescine ligase; PFAM: glutamine synthetase catalytic region; KEGG: sse:Ssed_1060 glutamate--putrescine ligase. (449 aa)
gshATIGRFAM: glutamate--cysteine ligase; KEGG: sse:Ssed_1329 glutamate--cysteine ligase; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily. (542 aa)
Swoo_4643TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: spl:Spea_3916 glutamine synthetase, type I. (469 aa)
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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