STRINGSTRING
Swoo_2007 Swoo_2007 Swoo_4751 Swoo_4751 Swoo_4739 Swoo_4739 Swoo_4438 Swoo_4438 Swoo_4279 Swoo_4279 gcvP gcvP Swoo_3862 Swoo_3862 Swoo_3427 Swoo_3427 Swoo_3373 Swoo_3373 Swoo_3135 Swoo_3135 Swoo_3095 Swoo_3095 Swoo_3063 Swoo_3063 Swoo_2411 Swoo_2411 Swoo_2345 Swoo_2345 Swoo_2308 Swoo_2308 serC serC Swoo_2267 Swoo_2267 Swoo_2184 Swoo_2184 Swoo_2120 Swoo_2120 hisC hisC Swoo_1966 Swoo_1966 Swoo_1939 Swoo_1939 Swoo_1867 Swoo_1867 Swoo_1865 Swoo_1865 iscS iscS Swoo_1670 Swoo_1670 Swoo_1586 Swoo_1586 kynU kynU glyA glyA Swoo_1347 Swoo_1347 hemL hemL Swoo_1114 Swoo_1114 Swoo_0859 Swoo_0859 Swoo_0852 Swoo_0852 Swoo_0827 Swoo_0827 argD argD Swoo_0622 Swoo_0622 Swoo_0566 Swoo_0566 Swoo_0447 Swoo_0447 kbl kbl
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Swoo_2007PFAM: aminotransferase class V; Pyridoxal-dependent decarboxylase; KEGG: msi:Msm_0987 tyrosine decarboxylase, MfnA. (403 aa)
Swoo_4751PFAM: aminotransferase class I and II; KEGG: spl:Spea_3654 aminotransferase class I and II. (383 aa)
Swoo_4739TIGRFAM: glutamate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase; KEGG: vfi:VF1064 glutamate decarboxylase; Belongs to the group II decarboxylase family. (464 aa)
Swoo_4438Putative transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; KEGG: syf:Synpcc7942_1725 regulatory protein GntR, HTH. (476 aa)
Swoo_4279PFAM: aminotransferase class V; KEGG: spl:Spea_3648 aminotransferase class V. (462 aa)
gcvPGlycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. (969 aa)
Swoo_3862KEGG: slo:Shew_3172 4-aminobutyrate aminotransferase; TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (427 aa)
Swoo_3427O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: sse:Ssed_3283 O-acetylhomoserine aminocarboxypropyltransferase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase. (429 aa)
Swoo_3373PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: cps:CPS_3935 transcriptional regulator, GntR family. (484 aa)
Swoo_3135PFAM: Pyridoxal-dependent decarboxylase; KEGG: sse:Ssed_2780 pyridoxal-dependent decarboxylase. (551 aa)
Swoo_3095Methionine gamma-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sse:Ssed_1559 methionine gamma-lyase. (392 aa)
Swoo_3063PFAM: aminotransferase class I and II; KEGG: sse:Ssed_1586 valine-pyruvate aminotransferase. (420 aa)
Swoo_2411Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: sse:Ssed_2225 aspartate transaminase. (397 aa)
Swoo_2345Threonine aldolase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: spl:Spea_2205 threonine aldolase. (337 aa)
Swoo_2308Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: sse:Ssed_2301 aspartate transaminase. (401 aa)
serCPhosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (364 aa)
Swoo_2267PFAM: aminotransferase class I and II; KEGG: sse:Ssed_2340 aminotransferase, class I and II. (403 aa)
Swoo_2184PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sse:Ssed_2422 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (394 aa)
Swoo_2120TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: sse:Ssed_2496 cystathionine beta-lyase. (391 aa)
hisCTIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: sse:Ssed_2543 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (348 aa)
Swoo_1966PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: son:SO_2282 transcriptional regulator, GntR family. (454 aa)
Swoo_1939PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: mmw:Mmwyl1_3949 putative transcriptional regulator, GntR family. (476 aa)
Swoo_18678-amino-7-oxononanoate synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aminotransferase class I and II; aminotransferase class-III; KEGG: sse:Ssed_2775 8-amino-7-oxononanoate synthase. (400 aa)
Swoo_1865TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: sse:Ssed_2777 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (455 aa)
iscSCysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. (404 aa)
Swoo_1670PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: vvy:VV0363 pilin glycosylation protein; Belongs to the DegT/DnrJ/EryC1 family. (391 aa)
Swoo_1586PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: sse:Ssed_3098 UDP-bacillosamine synthetase; Belongs to the DegT/DnrJ/EryC1 family. (382 aa)
kynUKynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively. (430 aa)
glyAGlycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (418 aa)
Swoo_1347Threonine aldolase; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sse:Ssed_1247 threonine aldolase. (336 aa)
hemLTIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: sse:Ssed_1088 glutamate-1-semialdehyde-2,1-aminomutase. (428 aa)
Swoo_1114PFAM: aminotransferase class-III; KEGG: sse:Ssed_1044 beta-alanine--pyruvate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (445 aa)
Swoo_0859Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (403 aa)
Swoo_0852PFAM: aminotransferase class I and II; KEGG: ecx:EcHS_A0652 aminotransferase, classes I and II. (384 aa)
Swoo_0827KEGG: vvu:VV2_1425 glutamate decarboxylase. (592 aa)
argDSuccinylornithine transaminase family; TIGRFAM: acetylornithine and succinylornithine aminotransferase; succinylornithine transaminase family; PFAM: aminotransferase class-III; KEGG: sse:Ssed_0809 acetylornithine and succinylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (405 aa)
Swoo_0622O-succinylhomoserine (thiol)-lyase; KEGG: sse:Ssed_4041 cystathionine gamma-synthase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein. (388 aa)
Swoo_0566PFAM: aminotransferase class V; beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: slo:Shew_3354 aminotransferase, class V. (771 aa)
Swoo_0447Serine--pyruvate transaminase; PFAM: aminotransferase class V; KEGG: sse:Ssed_4160 serine--pyruvate transaminase. (380 aa)
kbl2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA. (397 aa)
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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