STRINGSTRING
Swoo_0025 Swoo_0025 Swoo_0027 Swoo_0027 Swoo_0776 Swoo_0776 Swoo_0793 Swoo_0793 Swoo_1047 Swoo_1047 Swoo_1442 Swoo_1442 Swoo_2270 Swoo_2270 Swoo_3288 Swoo_3288 Swoo_3754 Swoo_3754 Swoo_4910 Swoo_4910
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Swoo_0025KEGG: sse:Ssed_0027 protoporphyrinogen oxidase. (175 aa)
Swoo_0027KEGG: sse:Ssed_0029 protoporphyrinogen oxidase. (179 aa)
Swoo_0776Sulfite reductase (NADPH) flavoprotein, alpha chain; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component. (594 aa)
Swoo_0793KEGG: sse:Ssed_3790 protoporphyrinogen oxidase. (173 aa)
Swoo_1047PFAM: NADPH-dependent FMN reductase; KEGG: sse:Ssed_0994 NADPH-dependent FMN reductase. (210 aa)
Swoo_1442PFAM: NAD(P)H dehydrogenase (quinone); KEGG: sse:Ssed_1348 putative NAD(P)H oxidoreductase. (205 aa)
Swoo_2270Flavodoxin; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family. (175 aa)
Swoo_3288PFAM: flavodoxin/nitric oxide synthase; KEGG: sse:Ssed_3168 flavodoxin/nitric oxide synthase. (153 aa)
Swoo_3754PFAM: NADPH-dependent FMN reductase; KEGG: sse:Ssed_3574 hypothetical protein. (173 aa)
Swoo_4910PFAM: flavodoxin/nitric oxide synthase; KEGG: sse:Ssed_4498 flavodoxin/nitric oxide synthase. (150 aa)
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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