STRINGSTRING
Swoo_0275 Swoo_0275 Swoo_0121 Swoo_0121 Swoo_0125 Swoo_0125 Swoo_0929 Swoo_0929 Swoo_0935 Swoo_0935 Swoo_0937 Swoo_0937 Swoo_1127 Swoo_1127 Swoo_1135 Swoo_1135 Swoo_1136 Swoo_1136 Swoo_1140 Swoo_1140 Swoo_1143 Swoo_1143 Swoo_1196 Swoo_1196 Swoo_1220 Swoo_1220 Swoo_1236 Swoo_1236 Swoo_1306 Swoo_1306 kmo kmo Swoo_1835 Swoo_1835 Swoo_1875 Swoo_1875 Swoo_2098 Swoo_2098 Swoo_2208 Swoo_2208 Swoo_2300 Swoo_2300 Swoo_2389 Swoo_2389 Swoo_2405 Swoo_2405 Swoo_2443 Swoo_2443 Swoo_2486 Swoo_2486 Swoo_2722 Swoo_2722 Swoo_2774 Swoo_2774 Swoo_2820 Swoo_2820 Swoo_2930 Swoo_2930 Swoo_2943 Swoo_2943 Swoo_2999 Swoo_2999 mnmC mnmC Swoo_3412 Swoo_3412 Swoo_3444 Swoo_3444 Swoo_3694 Swoo_3694 Swoo_3776 Swoo_3776 Swoo_3837 Swoo_3837 Swoo_3907 Swoo_3907 Swoo_3912 Swoo_3912 Swoo_3936 Swoo_3936 Swoo_3937 Swoo_3937 Swoo_3938 Swoo_3938 Swoo_3970 Swoo_3970 Swoo_3972 Swoo_3972 Swoo_4077 Swoo_4077 Swoo_4289 Swoo_4289 Swoo_4358 Swoo_4358 Swoo_4606 Swoo_4606 Swoo_4794 Swoo_4794 Swoo_4873 Swoo_4873 mnmG mnmG Swoo_0321 Swoo_0321 Swoo_0367 Swoo_0367 Swoo_0369 Swoo_0369 Swoo_0509 Swoo_0509 Swoo_0586 Swoo_0586 Swoo_0633 Swoo_0633 Swoo_0672 Swoo_0672
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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Swoo_0275TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: spl:Spea_3939 flavocytochrome c; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (506 aa)
Swoo_0121TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sse:Ssed_0142 glutathione-disulfide reductase. (451 aa)
Swoo_0125PFAM: monooxygenase FAD-binding; KEGG: bme:BMEI1017 salicylate hydroxylase. (374 aa)
Swoo_0929TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: sse:Ssed_0830 FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (522 aa)
Swoo_0935PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_0836 FAD dependent oxidoreductase. (391 aa)
Swoo_0937TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sse:Ssed_0838 formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1426 aa)
Swoo_1127PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_1057 FAD dependent oxidoreductase. (435 aa)
Swoo_1135PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_1065 FAD dependent oxidoreductase. (428 aa)
Swoo_1136PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sse:Ssed_1067 putative glutamate synthase (NADPH). (598 aa)
Swoo_1140Tryptophan halogenase; PFAM: FAD dependent oxidoreductase; tryptophan halogenase; KEGG: sbl:Sbal_1121 tryptophan halogenase. (500 aa)
Swoo_1143PFAM: tryptophan halogenase; KEGG: sbl:Sbal_1124 tryptophan halogenase. (528 aa)
Swoo_1196Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. (565 aa)
Swoo_1220TIGRFAM: glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sse:Ssed_1125 glutamate synthase, small subunit. (469 aa)
Swoo_1236L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate. (536 aa)
Swoo_1306PFAM: tryptophan halogenase; KEGG: sdn:Sden_2707 tryptophan halogenase. (507 aa)
kmoKynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily. (456 aa)
Swoo_1835KEGG: sse:Ssed_2816 succinate dehydrogenase; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (588 aa)
Swoo_1875TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sse:Ssed_2765 nitrite reductase (NAD(P)H), large subunit. (880 aa)
Swoo_2098PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: spl:Spea_3414 NADH dehydrogenase. (433 aa)
Swoo_2208PFAM: tryptophan halogenase; KEGG: sfr:Sfri_1786 tryptophan halogenase. (502 aa)
Swoo_2300PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sse:Ssed_2310 NADH:flavin oxidoreductase/NADH oxidase. (671 aa)
Swoo_2389PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_2235 FAD dependent oxidoreductase. (446 aa)
Swoo_2405Molydopterin dinucleotide-binding region; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: hau:Haur_2925 molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1299 aa)
Swoo_2443PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sme:SMb21143 mercuric reductase. (469 aa)
Swoo_2486TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sse:Ssed_2124 thioredoxin reductase. (318 aa)
Swoo_2722PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_1866 FAD dependent oxidoreductase. (429 aa)
Swoo_2774KEGG: slo:Shew_1482 amine oxidase. (417 aa)
Swoo_2820PFAM: FAD dependent oxidoreductase; KEGG: spl:Spea_1706 FAD dependent oxidoreductase. (432 aa)
Swoo_2930PFAM: glucose-methanol-choline oxidoreductase; KEGG: cps:CPS_3053 putative oxidoreductase. (527 aa)
Swoo_2943PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sse:Ssed_1665 NADH:flavin oxidoreductase/NADH oxidase. (672 aa)
Swoo_2999Gluconate 2-dehydrogenase (acceptor); PFAM: glucose-methanol-choline oxidoreductase; KEGG: sse:Ssed_3542 glucose-methanol-choline oxidoreductase. (561 aa)
mnmCtRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the N-terminal section; belongs to the methyltransferase superfamily. tRNA (mnm(5)s(2)U34)-methyltransferase family. (696 aa)
Swoo_3412PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_3266 putative uncharacterized dehydrogenase. (535 aa)
Swoo_3444KEGG: spl:Spea_1582 conserved hypothetical protein. (1040 aa)
Swoo_3694TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: sse:Ssed_3469 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. (398 aa)
Swoo_3776KEGG: sse:Ssed_3877 succinate dehydrogenase; TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (596 aa)
Swoo_3837PFAM: tryptophan halogenase; KEGG: cps:CPS_0239 putative tryptophan halogenase. (524 aa)
Swoo_3907PFAM: FAD dependent oxidoreductase; KEGG: cps:CPS_0260 hypothetical protein. (491 aa)
Swoo_3912TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; KEGG: spl:Spea_3574 flavocytochrome c. (586 aa)
Swoo_3936PFAM: tryptophan halogenase; KEGG: sde:Sde_1096 tryptophan halogenase, putative. (511 aa)
Swoo_3937PFAM: tryptophan halogenase; KEGG: ccr:CC_0972 tryptophan halogenase, putative. (502 aa)
Swoo_3938PFAM: tryptophan halogenase; KEGG: ccr:CC_0971 tryptophan halogenase, putative. (505 aa)
Swoo_3970TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: sse:Ssed_3676 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. (404 aa)
Swoo_39722-polyprenyl-6-methoxyphenol 4-hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase FAD-binding; KEGG: sse:Ssed_3677 2-polyprenyl-6-methoxyphenol 4-hydroxylase. (416 aa)
Swoo_4077PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sse:Ssed_3727 NADH dehydrogenase. (548 aa)
Swoo_4289PFAM: monooxygenase FAD-binding; tryptophan halogenase; KEGG: ccr:CC_0555 hypothetical protein. (372 aa)
Swoo_4358PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_0595 FAD dependent oxidoreductase. (523 aa)
Swoo_4606Tryptophan halogenase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: sse:Ssed_0315 tryptophan halogenase. (420 aa)
Swoo_4794Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone. (549 aa)
Swoo_4873HI0933 family protein; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sse:Ssed_4466 hypothetical protein. (394 aa)
mnmGGlucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. (630 aa)
Swoo_0321TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: spl:Spea_0421 dihydrolipoamide dehydrogenase. (476 aa)
Swoo_0367PFAM: glucose-methanol-choline oxidoreductase; KEGG: sus:Acid_7382 glucose-methanol-choline oxidoreductase. (565 aa)
Swoo_0369PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sse:Ssed_4234 NADH dehydrogenase. (402 aa)
Swoo_0509KEGG: sse:Ssed_4114 succinate dehydrogenase; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein. (674 aa)
Swoo_0586KEGG: vfi:VFA0164 L-lysine 6-monooxygenase. (444 aa)
Swoo_06332-hydroxyglutarate dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: slo:Shew_0530 FAD dependent oxidoreductase. (378 aa)
Swoo_0672PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: sse:Ssed_3863 glucose-methanol-choline oxidoreductase. (532 aa)
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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