STRINGSTRING
Swoo_0224 Swoo_0224 Swoo_0119 Swoo_0119 fadB fadB Swoo_3199 Swoo_3199 Swoo_3198 Swoo_3198 Swoo_3026 Swoo_3026 Swoo_0214 Swoo_0214 menB menB Swoo_4327 Swoo_4327 Swoo_4199 Swoo_4199 Swoo_3225 Swoo_3225
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Swoo_0224TIGRFAM: phenylacetate degradation, enoyl-CoA hydratase paaB; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: spe:Spro_3078 phenylacetate degradation probable enoyl-CoA hydratase PaaB. (262 aa)
Swoo_0119PFAM: Enoyl-CoA hydratase/isomerase; KEGG: cps:CPS_2528 enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family. (281 aa)
fadBFatty oxidation complex, alpha subunit FadB; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. (716 aa)
Swoo_3199PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sse:Ssed_1476 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (257 aa)
Swoo_3198PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sse:Ssed_1477 enoyl-CoA hydratase/isomerase. (381 aa)
Swoo_3026Fatty acid oxidation complex, alpha subunit FadJ; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. (713 aa)
Swoo_0214PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: mlo:mll4199 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family. (696 aa)
menBNaphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily. (301 aa)
Swoo_4327PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sse:Ssed_0623 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (299 aa)
Swoo_4199PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sse:Ssed_0770 enoyl-CoA hydratase/isomerase. (245 aa)
Swoo_3225PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sse:Ssed_1456 enoyl-CoA hydratase/isomerase. (279 aa)
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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