STRINGSTRING
Swoo_0212 Swoo_0212 Swoo_0761 Swoo_0761 nrfA nrfA Swoo_1130 Swoo_1130 Swoo_1220 Swoo_1220 Swoo_1221 Swoo_1221 hcp hcp Swoo_1417 Swoo_1417 Swoo_1860 Swoo_1860 Swoo_1875 Swoo_1875 Swoo_1876 Swoo_1876 Swoo_1877 Swoo_1877 Swoo_2101 Swoo_2101 Swoo_2140 Swoo_2140 Swoo_2185 Swoo_2185 Swoo_2626 Swoo_2626 Swoo_2631 Swoo_2631 Swoo_2633 Swoo_2633 Swoo_2634 Swoo_2634 Swoo_2635 Swoo_2635 Swoo_2640 Swoo_2640 Swoo_2679 Swoo_2679 napA napA Swoo_3596 Swoo_3596 napA-2 napA-2 Swoo_4111 Swoo_4111 Swoo_4643 Swoo_4643 Swoo_4755 Swoo_4755
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Swoo_0212PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: psb:Psyr_0007 aliphatic nitrilase. (334 aa)
Swoo_0761KEGG: shm:Shewmr7_0883 putative nitric oxide reductase (subunit B) transmembrane protein. (762 aa)
nrfAFormate-dependent cytochrome c nitrite reductase, c552 subunit; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family. (466 aa)
Swoo_1130Glutamate--putrescine ligase; PFAM: glutamine synthetase catalytic region; KEGG: sse:Ssed_1060 glutamate--putrescine ligase. (449 aa)
Swoo_1220TIGRFAM: glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sse:Ssed_1125 glutamate synthase, small subunit. (469 aa)
Swoo_1221PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: sse:Ssed_1126 glutamate synthase (ferredoxin). (1482 aa)
hcpHybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. (552 aa)
Swoo_1417PFAM: multicopper oxidase type 1; multicopper oxidase type 3; KEGG: net:Neut_1403 multicopper oxidase, type 3. (314 aa)
Swoo_1860PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sse:Ssed_2799 nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. (734 aa)
Swoo_1875TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sse:Ssed_2765 nitrite reductase (NAD(P)H), large subunit. (880 aa)
Swoo_1876TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: sse:Ssed_2764 nitrite reductase (NAD(P)H), small subunit. (120 aa)
Swoo_1877TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_2763 nitrite transporter. (488 aa)
Swoo_2101PFAM: glutamine synthetase catalytic region; KEGG: sse:Ssed_2532 hypothetical protein. (455 aa)
Swoo_2140PFAM: NAD-glutamate dehydrogenase; KEGG: sse:Ssed_2476 NAD-glutamate dehydrogenase. (1614 aa)
Swoo_2185Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (203 aa)
Swoo_2626PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_1964 nitrate/nitrite transporter. (491 aa)
Swoo_2631KEGG: sse:Ssed_1957 nitrate reductase; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit. (225 aa)
Swoo_2633TIGRFAM: nitrate reductase, beta subunit; KEGG: sse:Ssed_1955 respiratory nitrate reductase beta subuni. (512 aa)
Swoo_2634TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sse:Ssed_1954 respiratory nitrate reductase alpha chain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1267 aa)
Swoo_2635PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_1953 nitrate/nitrite transporter. (534 aa)
Swoo_2640PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_1938 nitrate/nitrite transporter. (424 aa)
Swoo_2679Nitrate reductase cytochrome c-type subunit (NapB); Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family. (164 aa)
napAPeriplasmic nitrate reductase, large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite. (831 aa)
Swoo_3596PFAM: 2-nitropropane dioxygenase NPD; KEGG: bha:BH1205 hypothetical protein. (341 aa)
napA-2Periplasmic nitrate reductase, large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite. (826 aa)
Swoo_4111Nitrate reductase cytochrome c-type subunit (NapB); Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family. (142 aa)
Swoo_4643TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: spl:Spea_3916 glutamine synthetase, type I. (469 aa)
Swoo_4755KEGG: sse:Ssed_4366 hypothetical protein. (488 aa)
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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