STRINGSTRING
Swoo_0002 Swoo_0002 Swoo_0343 Swoo_0343 Swoo_0596 Swoo_0596 Swoo_0640 Swoo_0640 Swoo_0897 Swoo_0897 Swoo_1060 Swoo_1060 mutH mutH xseA xseA Swoo_1793 Swoo_1793 Swoo_1983 Swoo_1983 Swoo_1990 Swoo_1990 Swoo_2049 Swoo_2049 Swoo_2197 Swoo_2197 dnaQ dnaQ Swoo_2834 Swoo_2834 ligA ligA Swoo_3266 Swoo_3266 mutS mutS xseB xseB Swoo_3704 Swoo_3704 mutL mutL Swoo_4498 Swoo_4498
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Swoo_0002DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (366 aa)
Swoo_0343DNA adenine methylase; KEGG: sse:Ssed_4262 site-specific DNA-methyltransferase (adenine-specific); TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase. (279 aa)
Swoo_0596KEGG: shw:Sputw3181_0735 hypothetical protein. (707 aa)
Swoo_0640Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. (225 aa)
Swoo_0897TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: sse:Ssed_0895 single-stranded-DNA-specific exonuclease RecJ. (574 aa)
Swoo_1060PFAM: DNA polymerase III chi subunit HolC; KEGG: sse:Ssed_1009 DNA polymerase III chi subunit, HolC. (156 aa)
mutHDNA mismatch repair endonuclease mutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair; Belongs to the MutH family. (231 aa)
xseAExodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (442 aa)
Swoo_1793DNA polymerase III, subunits gamma and tau; KEGG: sse:Ssed_2852 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase. (911 aa)
Swoo_1983TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: sse:Ssed_2647 DNA-directed DNA polymerase. (303 aa)
Swoo_1990PFAM: ATP dependent DNA ligase; KEGG: sse:Ssed_2639 ATP dependent DNA ligase. (288 aa)
Swoo_2049Exodeoxyribonuclease I; PFAM: Exonuclease RNase T and DNA polymerase III; Exonuclease domain protein; KEGG: sse:Ssed_2617 exodeoxyribonuclease I. (470 aa)
Swoo_2197DNA polymerase III, epsilon subunit; KEGG: sse:Ssed_2410 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease. (205 aa)
dnaQDNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (242 aa)
Swoo_2834PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: slo:Shew_2368 exonuclease, RNase T and DNA polymerase III. (226 aa)
ligADNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (670 aa)
Swoo_3266DNA polymerase III, alpha subunit; KEGG: sse:Ssed_3146 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein. (1157 aa)
mutSDNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (858 aa)
xseBExodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (79 aa)
Swoo_3704DNA polymerase III, delta subunit; KEGG: sse:Ssed_3481 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta. (346 aa)
mutLDNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (614 aa)
Swoo_4498TIGRFAM: DNA helicase II; PFAM: UvrD/REP helicase; KEGG: sse:Ssed_0467 DNA helicase II. (721 aa)
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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