(27 nodes) Acriflavin resistance protein, and RND efflux pump, membrane fusion protein network (Chitinophaga ginsengisegetis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SKC95272.1	Outer membrane protein TolC. (458 aa)
	SKC95273.1	Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1045 aa)
	SKC95277.1	RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (360 aa)
	SKD02714.1	Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (362 aa)
	SKD02716.1	Multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1043 aa)
	SKD02719.1	Outer membrane protein TolC. (450 aa)
	SKD07742.1	Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1186 aa)
	SKD07744.1	RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (374 aa)
	SKD07746.1	Outer membrane protein TolC. (443 aa)
	SKD08089.1	RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (374 aa)
	SKD08090.1	Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1080 aa)
	SKD08091.1	Outer membrane protein TolC. (471 aa)
	SKD08498.1	Outer membrane protein TolC. (451 aa)
	SKD08499.1	RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (356 aa)
	SKD08500.1	Hydrophobic/amphiphilic exporter-1, HAE1 family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1060 aa)
	SKD08669.1	Outer membrane protein TolC. (465 aa)
	SKD08670.1	Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1067 aa)
	SKD08671.1	RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (363 aa)
	SKD08919.1	Hydrophobic/amphiphilic exporter-1, HAE1 family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1039 aa)
	SKD08920.1	RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (352 aa)
	SKD08921.1	Outer membrane protein TolC. (436 aa)
	SKD09240.1	RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (342 aa)
	SKD09241.1	Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1039 aa)
	SKD09242.1	Outer membrane protein TolC. (427 aa)
	SKD09865.1	Outer membrane protein TolC. (460 aa)
	SKD09866.1	Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1090 aa)
	SKD09867.1	RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (373 aa)

Your Current Organism:

Chitinophaga ginsengisegetis

NCBI taxonomy Id: 393003
Other names: C. ginsengisegetis, Chitinophaga ginsengisegetis Lee et al. 2007, DSM 18108, KCTC 12654, strain Gsoil 040

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SKC95272.1	SKC95273.1	SAMN05660461_0319	SAMN05660461_0320	Outer membrane protein TolC.	Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.990
SKC95272.1	SKC95277.1	SAMN05660461_0319	SAMN05660461_0321	Outer membrane protein TolC.	RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.964
SKC95272.1	SKD02714.1	SAMN05660461_0319	SAMN05660461_2619	Outer membrane protein TolC.	Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.616
SKC95272.1	SKD02716.1	SAMN05660461_0319	SAMN05660461_2620	Outer membrane protein TolC.	Multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.525
SKC95272.1	SKD07742.1	SAMN05660461_0319	SAMN05660461_3790	Outer membrane protein TolC.	Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.525
SKC95272.1	SKD07744.1	SAMN05660461_0319	SAMN05660461_3791	Outer membrane protein TolC.	RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.592
SKC95272.1	SKD08089.1	SAMN05660461_0319	SAMN05660461_4040	Outer membrane protein TolC.	RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.874
SKC95272.1	SKD08090.1	SAMN05660461_0319	SAMN05660461_4041	Outer membrane protein TolC.	Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.845
SKC95272.1	SKD08499.1	SAMN05660461_0319	SAMN05660461_4365	Outer membrane protein TolC.	RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.541
SKC95272.1	SKD08500.1	SAMN05660461_0319	SAMN05660461_4366	Outer membrane protein TolC.	Hydrophobic/amphiphilic exporter-1, HAE1 family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.525
SKC95272.1	SKD08670.1	SAMN05660461_0319	SAMN05660461_4546	Outer membrane protein TolC.	Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.960
SKC95272.1	SKD08671.1	SAMN05660461_0319	SAMN05660461_4547	Outer membrane protein TolC.	RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.890
SKC95272.1	SKD08919.1	SAMN05660461_0319	SAMN05660461_4796	Outer membrane protein TolC.	Hydrophobic/amphiphilic exporter-1, HAE1 family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.525
SKC95272.1	SKD08920.1	SAMN05660461_0319	SAMN05660461_4797	Outer membrane protein TolC.	RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.541
SKC95272.1	SKD09240.1	SAMN05660461_0319	SAMN05660461_5123	Outer membrane protein TolC.	RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.592
SKC95272.1	SKD09241.1	SAMN05660461_0319	SAMN05660461_5124	Outer membrane protein TolC.	Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.585
SKC95272.1	SKD09242.1	SAMN05660461_0319	SAMN05660461_5125	Outer membrane protein TolC.	Outer membrane protein TolC.	0.422
SKC95272.1	SKD09866.1	SAMN05660461_0319	SAMN05660461_5759	Outer membrane protein TolC.	Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.863
SKC95272.1	SKD09867.1	SAMN05660461_0319	SAMN05660461_5760	Outer membrane protein TolC.	RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.879
SKC95273.1	SKC95272.1	SAMN05660461_0320	SAMN05660461_0319	Multidrug efflux pump subunit AcrB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	Outer membrane protein TolC.	0.990