STRINGSTRING
yqhD yqhD CtfA CtfA HQ45_01070 HQ45_01070 Pta Pta ackA ackA HQ45_08120 HQ45_08120 mutA mutA mutB mutB HQ45_09305 HQ45_09305 HQ45_09520 HQ45_09520 ctfB ctfB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
yqhDAlcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
CtfABranched-chain amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
HQ45_01070Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
PtaPhosphotransacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
ackAAcetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (398 aa)
HQ45_08120Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
mutAmethylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (625 aa)
mutBmethylmalonyl-CoA mutase; MDM; functions in conversion of succinate to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology. (715 aa)
HQ45_09305CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (684 aa)
HQ45_09520acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
ctfBAcetate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
Your Current Organism:
Porphyromonas crevioricanis
NCBI taxonomy Id: 393921
Other names: ATCC 55563, CCUG 47702 [[Porphyromonas cansulci]], JCM 13913 [[Porphyromonas cansulci]], JCM 15906, NCTC 12858 [[Porphyromonas cansulci]], NUM 402, P. crevioricanis, Porphyromonas cansulci, VPB 4875 [[Porphyromonas cansulci]]
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