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CtfA CtfA HQ45_01090 HQ45_01090 gcdB gcdB HQ45_01570 HQ45_01570 sdhA sdhA frdB frdB abfD abfD ScpC_3 ScpC_3 adhB adhB SucD SucD HQ45_03640 HQ45_03640 HQ45_03645 HQ45_03645 PaaH PaaH ScpC_2 ScpC_2 porB porB porA_2 porA_2 PorA_1 PorA_1 EchA8 EchA8 HQ45_09520 HQ45_09520 ctfB ctfB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CtfABranched-chain amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
HQ45_01090Biofilm PGA synthesis protein PgaD; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)
gcdBglutaconyl-CoA decarboxylase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
HQ45_01570Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
sdhAPart of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; Derived by automated computational analysis using gene prediction method: Protein Homology. (646 aa)
frdBSuccinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
abfD4-hydroxybutyryl-CoA dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (486 aa)
ScpC_34-hydroxybutyrate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (430 aa)
adhB4-hydroxybutyrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)
SucDSuccinate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)
HQ45_03640MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (618 aa)
HQ45_036452-oxoacid:ferredoxin oxidoreductase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
PaaH3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
ScpC_24-hydroxybutyrate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
porB2-oxoglutarate oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
porA_22-ketoisovalerate ferredoxin oxidoreductase; Catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)
PorA_1Racemase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1181 aa)
EchA8Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)
HQ45_09520acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
ctfBAcetate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
Your Current Organism:
Porphyromonas crevioricanis
NCBI taxonomy Id: 393921
Other names: ATCC 55563, CCUG 47702 [[Porphyromonas cansulci]], JCM 13913 [[Porphyromonas cansulci]], JCM 15906, NCTC 12858 [[Porphyromonas cansulci]], NUM 402, P. crevioricanis, Porphyromonas cansulci, VPB 4875 [[Porphyromonas cansulci]]
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