STRINGSTRING
HQ45_00275 HQ45_00275 CtfA CtfA dnaA dnaA mucD mucD PhoB PhoB CydB CydB cydA cydA KinE KinE DdpX DdpX ctfB ctfB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
HQ45_00275RNA polymerase sigma54 factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)
CtfABranched-chain amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
dnaAHypothetical protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (468 aa)
mucDDeoxyribonuclease HsdR; Derived by automated computational analysis using gene prediction method: Protein Homology. (498 aa)
PhoBHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the alkaline phosphatase family. (580 aa)
CydBCytochrome C oxidase assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
cydACytochrome C oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome ubiquinol oxidase subunit 1 family. (532 aa)
KinEHistidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
DdpXPeptidase M15; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. (196 aa)
ctfBAcetate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
Your Current Organism:
Porphyromonas crevioricanis
NCBI taxonomy Id: 393921
Other names: ATCC 55563, CCUG 47702 [[Porphyromonas cansulci]], JCM 13913 [[Porphyromonas cansulci]], JCM 15906, NCTC 12858 [[Porphyromonas cansulci]], NUM 402, P. crevioricanis, Porphyromonas cansulci, VPB 4875 [[Porphyromonas cansulci]]
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