(10 nodes) Fatty acid degradation network (Maricaulis maris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABI64832.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mlo:mlr5626 acyl-CoA dehydrogenase. (388 aa)
	ABI64835.1	acetyl-CoA acetyltransferase; KEGG: ccr:CC0077 fatty oxidation complex, beta subunit, putative; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (401 aa)
	ABI64836.1	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: ccr:CC0076 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase. (736 aa)
	ABI64990.1	KEGG: bpa:BPP4361 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (395 aa)
	ABI65953.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sil:SPO1955 glutaryl-CoA dehydrogenase. (406 aa)
	ABI66939.1	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: eli:ELI_00320 fatty oxidation complex, alpha subunit; Belongs to the enoyl-CoA hydratase/isomerase family. (679 aa)
	ABI66949.1	KEGG: reu:Reut_B3829 acetyl-CoA acetyltransferase. (385 aa)
	ABI66951.1	KEGG: nar:Saro_0867 acetyl-CoA C-acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (390 aa)
	ABI66977.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: jan:Jann_1327 acyl-CoA dehydrogenase-like. (391 aa)
	ABI67357.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rme:Rmet_3162 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)

Your Current Organism:

Maricaulis maris

NCBI taxonomy Id: 394221
Other names: M. maris MCS10, Maricaulis maris MCS10, Maricaulis maris str. MCS10, Maricaulis maris strain MCS10

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABI64832.1	ABI64835.1	Mmar10_0539	Mmar10_0542	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mlo:mlr5626 acyl-CoA dehydrogenase.	acetyl-CoA acetyltransferase; KEGG: ccr:CC0077 fatty oxidation complex, beta subunit, putative; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.971
ABI64832.1	ABI64836.1	Mmar10_0539	Mmar10_0543	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mlo:mlr5626 acyl-CoA dehydrogenase.	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: ccr:CC0076 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.	0.985
ABI64832.1	ABI64990.1	Mmar10_0539	Mmar10_0697	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mlo:mlr5626 acyl-CoA dehydrogenase.	KEGG: bpa:BPP4361 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.937
ABI64832.1	ABI65953.1	Mmar10_0539	Mmar10_1661	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mlo:mlr5626 acyl-CoA dehydrogenase.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sil:SPO1955 glutaryl-CoA dehydrogenase.	0.917
ABI64832.1	ABI66939.1	Mmar10_0539	Mmar10_2653	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mlo:mlr5626 acyl-CoA dehydrogenase.	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: eli:ELI_00320 fatty oxidation complex, alpha subunit; Belongs to the enoyl-CoA hydratase/isomerase family.	0.914
ABI64832.1	ABI66949.1	Mmar10_0539	Mmar10_2663	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mlo:mlr5626 acyl-CoA dehydrogenase.	KEGG: reu:Reut_B3829 acetyl-CoA acetyltransferase.	0.937
ABI64832.1	ABI66951.1	Mmar10_0539	Mmar10_2665	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mlo:mlr5626 acyl-CoA dehydrogenase.	KEGG: nar:Saro_0867 acetyl-CoA C-acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.937
ABI64832.1	ABI66977.1	Mmar10_0539	Mmar10_2691	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mlo:mlr5626 acyl-CoA dehydrogenase.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: jan:Jann_1327 acyl-CoA dehydrogenase-like.	0.924
ABI64832.1	ABI67357.1	Mmar10_0539	Mmar10_3078	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mlo:mlr5626 acyl-CoA dehydrogenase.	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rme:Rmet_3162 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.943
ABI64835.1	ABI64832.1	Mmar10_0542	Mmar10_0539	acetyl-CoA acetyltransferase; KEGG: ccr:CC0077 fatty oxidation complex, beta subunit, putative; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mlo:mlr5626 acyl-CoA dehydrogenase.	0.971
ABI64835.1	ABI64836.1	Mmar10_0542	Mmar10_0543	acetyl-CoA acetyltransferase; KEGG: ccr:CC0077 fatty oxidation complex, beta subunit, putative; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: ccr:CC0076 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.	0.999
ABI64835.1	ABI64990.1	Mmar10_0542	Mmar10_0697	acetyl-CoA acetyltransferase; KEGG: ccr:CC0077 fatty oxidation complex, beta subunit, putative; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	KEGG: bpa:BPP4361 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.916
ABI64835.1	ABI65953.1	Mmar10_0542	Mmar10_1661	acetyl-CoA acetyltransferase; KEGG: ccr:CC0077 fatty oxidation complex, beta subunit, putative; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sil:SPO1955 glutaryl-CoA dehydrogenase.	0.402
ABI64835.1	ABI66939.1	Mmar10_0542	Mmar10_2653	acetyl-CoA acetyltransferase; KEGG: ccr:CC0077 fatty oxidation complex, beta subunit, putative; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: eli:ELI_00320 fatty oxidation complex, alpha subunit; Belongs to the enoyl-CoA hydratase/isomerase family.	0.999
ABI64835.1	ABI66949.1	Mmar10_0542	Mmar10_2663	acetyl-CoA acetyltransferase; KEGG: ccr:CC0077 fatty oxidation complex, beta subunit, putative; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	KEGG: reu:Reut_B3829 acetyl-CoA acetyltransferase.	0.900
ABI64835.1	ABI66951.1	Mmar10_0542	Mmar10_2665	acetyl-CoA acetyltransferase; KEGG: ccr:CC0077 fatty oxidation complex, beta subunit, putative; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	KEGG: nar:Saro_0867 acetyl-CoA C-acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.915
ABI64835.1	ABI66977.1	Mmar10_0542	Mmar10_2691	acetyl-CoA acetyltransferase; KEGG: ccr:CC0077 fatty oxidation complex, beta subunit, putative; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: jan:Jann_1327 acyl-CoA dehydrogenase-like.	0.937
ABI64835.1	ABI67357.1	Mmar10_0542	Mmar10_3078	acetyl-CoA acetyltransferase; KEGG: ccr:CC0077 fatty oxidation complex, beta subunit, putative; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rme:Rmet_3162 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.649
ABI64836.1	ABI64832.1	Mmar10_0543	Mmar10_0539	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: ccr:CC0076 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mlo:mlr5626 acyl-CoA dehydrogenase.	0.985
ABI64836.1	ABI64835.1	Mmar10_0543	Mmar10_0542	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: ccr:CC0076 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.	acetyl-CoA acetyltransferase; KEGG: ccr:CC0077 fatty oxidation complex, beta subunit, putative; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.999