(5 nodes) 4Fe-4S binding domain, and NADH dehydrogenase complex network (Maricaulis maris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABI64643.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bja:blr6742 putative glutamate synthase small subunit. (598 aa)
	ABI66968.1	PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: bja:bll3138 NADH dehydrogenase I chain E. (163 aa)
	ABI66969.1	PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: reu:Reut_A0618 NADH dehydrogenase (quinone). (511 aa)
	ABI66970.1	TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mfa:Mfla_0720 formate dehydrogenase, alpha subunit. (951 aa)
	fdhD	Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family. (269 aa)

Your Current Organism:

Maricaulis maris

NCBI taxonomy Id: 394221
Other names: M. maris MCS10, Maricaulis maris MCS10, Maricaulis maris str. MCS10, Maricaulis maris strain MCS10

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABI64643.1	ABI66968.1	Mmar10_0350	Mmar10_2682	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bja:blr6742 putative glutamate synthase small subunit.	PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: bja:bll3138 NADH dehydrogenase I chain E.	0.995
ABI64643.1	ABI66969.1	Mmar10_0350	Mmar10_2683	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bja:blr6742 putative glutamate synthase small subunit.	PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: reu:Reut_A0618 NADH dehydrogenase (quinone).	0.999
ABI64643.1	ABI66970.1	Mmar10_0350	Mmar10_2684	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bja:blr6742 putative glutamate synthase small subunit.	TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mfa:Mfla_0720 formate dehydrogenase, alpha subunit.	0.991
ABI64643.1	fdhD	Mmar10_0350	Mmar10_2685	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bja:blr6742 putative glutamate synthase small subunit.	Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.	0.525
ABI66968.1	ABI64643.1	Mmar10_2682	Mmar10_0350	PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: bja:bll3138 NADH dehydrogenase I chain E.	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bja:blr6742 putative glutamate synthase small subunit.	0.995
ABI66968.1	ABI66969.1	Mmar10_2682	Mmar10_2683	PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: bja:bll3138 NADH dehydrogenase I chain E.	PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: reu:Reut_A0618 NADH dehydrogenase (quinone).	0.999
ABI66968.1	ABI66970.1	Mmar10_2682	Mmar10_2684	PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: bja:bll3138 NADH dehydrogenase I chain E.	TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mfa:Mfla_0720 formate dehydrogenase, alpha subunit.	0.999
ABI66968.1	fdhD	Mmar10_2682	Mmar10_2685	PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: bja:bll3138 NADH dehydrogenase I chain E.	Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.	0.948
ABI66969.1	ABI64643.1	Mmar10_2683	Mmar10_0350	PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: reu:Reut_A0618 NADH dehydrogenase (quinone).	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bja:blr6742 putative glutamate synthase small subunit.	0.999
ABI66969.1	ABI66968.1	Mmar10_2683	Mmar10_2682	PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: reu:Reut_A0618 NADH dehydrogenase (quinone).	PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: bja:bll3138 NADH dehydrogenase I chain E.	0.999
ABI66969.1	ABI66970.1	Mmar10_2683	Mmar10_2684	PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: reu:Reut_A0618 NADH dehydrogenase (quinone).	TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mfa:Mfla_0720 formate dehydrogenase, alpha subunit.	0.999
ABI66969.1	fdhD	Mmar10_2683	Mmar10_2685	PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: reu:Reut_A0618 NADH dehydrogenase (quinone).	Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.	0.925
ABI66970.1	ABI64643.1	Mmar10_2684	Mmar10_0350	TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mfa:Mfla_0720 formate dehydrogenase, alpha subunit.	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bja:blr6742 putative glutamate synthase small subunit.	0.991
ABI66970.1	ABI66968.1	Mmar10_2684	Mmar10_2682	TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mfa:Mfla_0720 formate dehydrogenase, alpha subunit.	PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: bja:bll3138 NADH dehydrogenase I chain E.	0.999
ABI66970.1	ABI66969.1	Mmar10_2684	Mmar10_2683	TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mfa:Mfla_0720 formate dehydrogenase, alpha subunit.	PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: reu:Reut_A0618 NADH dehydrogenase (quinone).	0.999
ABI66970.1	fdhD	Mmar10_2684	Mmar10_2685	TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mfa:Mfla_0720 formate dehydrogenase, alpha subunit.	Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.	0.986
fdhD	ABI64643.1	Mmar10_2685	Mmar10_0350	Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bja:blr6742 putative glutamate synthase small subunit.	0.525
fdhD	ABI66968.1	Mmar10_2685	Mmar10_2682	Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.	PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: bja:bll3138 NADH dehydrogenase I chain E.	0.948
fdhD	ABI66969.1	Mmar10_2685	Mmar10_2683	Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.	PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: reu:Reut_A0618 NADH dehydrogenase (quinone).	0.925
fdhD	ABI66970.1	Mmar10_2685	Mmar10_2684	Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.	TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mfa:Mfla_0720 formate dehydrogenase, alpha subunit.	0.986