(43 nodes) Mixed, incl. TonB-dependent receptor-like, beta-barrel domain superfamily, and TonB, C-terminal network (Maricaulis maris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABI64375.1	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xoo:XOO0390 TonB-like protein; TC 2.C.1.1.1. (148 aa)
	ABI64539.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: nar:Saro_0454 TonB-dependent receptor. (948 aa)
	ABI64608.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eli:ELI_05030 TonB-dependent receptor. (770 aa)
	ABI64661.1	KEGG: ilo:IL0583 Oar-like outer membrane protein protein, OmpA family. (1066 aa)
	ABI64758.1	KEGG: ccr:CC0608 hypothetical protein. (329 aa)
	ABI64887.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ccr:CC0214 TonB-dependent receptor. (708 aa)
	ABI65005.1	Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (110 aa)
	ABI65161.1	KEGG: vpa:VP0167 hypothetical protein. (260 aa)
	ABI65162.1	Outer membrane transport energization protein ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: noc:Noc_0607 MotA/TolQ/ExbB proton channel; TC 2.C.1.1.1. (462 aa)
	ABI65163.1	Outer membrane transport energization protein ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: pha:PSHAb0522 putative TonB system-dependent transport protein; TC 2.C.1.1.1. (178 aa)
	ABI65164.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ilo:IL1856 biopolymer transport protein; TC 2.C.1.1.1. (135 aa)
	ABI65165.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sde:Sde_0355 branched-chain amino acid aminotransferase I; TC 2.C.1.1.1. (133 aa)
	ABI65166.1	Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (205 aa)
	ABI65167.1	SMART: Tetratricopeptide domain protein; KEGG: noc:Noc_0611 TPR repeat protein. (510 aa)
	ABI65168.1	KEGG: noc:Noc_0611 TPR repeat protein. (492 aa)
	ABI65169.1	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; KEGG: ilo:IL1855 TonB-like periplasmic protein; TC 2.C.1.1.1. (205 aa)
	ABI65258.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sil:SPO2689 iron ABC transporter, ATP-binding protein, putative; Belongs to the ABC transporter superfamily. (343 aa)
	ABI65259.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dar:Daro_1198 binding-protein-dependent transport systems inner membrane component. (536 aa)
	ABI65260.1	PFAM: extracellular solute-binding protein, family 1; KEGG: csa:Csal_0549 extracellular solute-binding protein, family 1. (353 aa)
	ABI65343.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_4276 TonB-dependent receptor. (830 aa)
	ABI65344.1	PFAM: sulfotransferase; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: nar:Saro_0601 sulfotransferase. (536 aa)
	ABI65408.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: xcb:XC_2512 TonB-dependent receptor. (839 aa)
	ABI65466.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sdn:Sden_2422 biopolymer transport protein ExbD/TolR; TC 2.C.1.1.1. (140 aa)
	ABI66102.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eli:ELI_01455 hypothetical protein. (961 aa)
	ABI66182.1	Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (391 aa)
	ABI66274.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: aci:ACIAD1534 putative TonB-dependent receptor protein (outer membrane salicin receptor). (809 aa)
	ABI66284.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: vvy:VVA0278 outer membrane receptor protein. (671 aa)
	ABI66511.1	Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (115 aa)
	ABI66697.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ccr:CC0454 TonB-dependent receptor. (786 aa)
	ABI66788.1	O-methyltransferase; KEGG: ilo:IL2291 predicted O-methyltransferase. (310 aa)
	ABI66789.1	KEGG: ccr:CC2255 hypothetical protein. (222 aa)
	ABI66794.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eli:ELI_01440 TonB-dependent receptor. (1015 aa)
	ABI66797.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: zmo:ZMO0230 ABC-type cobalamin/Fe3+ transport systems. (253 aa)
	ABI66798.1	PFAM: transport system permease protein; KEGG: rsp:RSP_2404 ABC cobalamin/Fe3+-siderophore transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (326 aa)
	ABI66799.1	KEGG: ccr:CC1191 iron compound ABC transporter, periplasmic substrate-binding protein. (293 aa)
	ABI66800.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eli:ELI_10805 TonB-dependent receptor. (632 aa)
	ABI66802.1	Hypothetical protein. (88 aa)
	ABI66941.1	KEGG: ccr:CC0674 hypothetical protein. (378 aa)
	ABI66945.1	PFAM: regulatory protein, TetR; KEGG: ccr:CC3192 transcriptional regulator, TetR family. (418 aa)
	ABI66946.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ccr:CC3194 TonB-dependent receptor. (979 aa)
	ABI66947.1	PFAM: major facilitator superfamily MFS_1; KEGG: eli:ELI_00305 hypothetical protein. (437 aa)
	ABI66948.1	PFAM: protein of unknown function DUF35; KEGG: rpd:RPD_3114 protein of unknown function DUF35. (136 aa)
	ABI66950.1	KEGG: eli:ELI_00290 hypothetical protein. (486 aa)

Your Current Organism:

Maricaulis maris

NCBI taxonomy Id: 394221
Other names: M. maris MCS10, Maricaulis maris MCS10, Maricaulis maris str. MCS10, Maricaulis maris strain MCS10

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABI64375.1	ABI64608.1	Mmar10_0079	Mmar10_0315	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xoo:XOO0390 TonB-like protein; TC 2.C.1.1.1.	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eli:ELI_05030 TonB-dependent receptor.	0.477
ABI64375.1	ABI64661.1	Mmar10_0079	Mmar10_0368	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xoo:XOO0390 TonB-like protein; TC 2.C.1.1.1.	KEGG: ilo:IL0583 Oar-like outer membrane protein protein, OmpA family.	0.439
ABI64375.1	ABI64887.1	Mmar10_0079	Mmar10_0594	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xoo:XOO0390 TonB-like protein; TC 2.C.1.1.1.	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ccr:CC0214 TonB-dependent receptor.	0.464
ABI64375.1	ABI65161.1	Mmar10_0079	Mmar10_0868	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xoo:XOO0390 TonB-like protein; TC 2.C.1.1.1.	KEGG: vpa:VP0167 hypothetical protein.	0.522
ABI64375.1	ABI65162.1	Mmar10_0079	Mmar10_0869	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xoo:XOO0390 TonB-like protein; TC 2.C.1.1.1.	Outer membrane transport energization protein ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: noc:Noc_0607 MotA/TolQ/ExbB proton channel; TC 2.C.1.1.1.	0.713
ABI64375.1	ABI65163.1	Mmar10_0079	Mmar10_0870	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xoo:XOO0390 TonB-like protein; TC 2.C.1.1.1.	Outer membrane transport energization protein ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: pha:PSHAb0522 putative TonB system-dependent transport protein; TC 2.C.1.1.1.	0.685
ABI64375.1	ABI65164.1	Mmar10_0079	Mmar10_0871	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xoo:XOO0390 TonB-like protein; TC 2.C.1.1.1.	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ilo:IL1856 biopolymer transport protein; TC 2.C.1.1.1.	0.720
ABI64375.1	ABI65165.1	Mmar10_0079	Mmar10_0872	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xoo:XOO0390 TonB-like protein; TC 2.C.1.1.1.	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sde:Sde_0355 branched-chain amino acid aminotransferase I; TC 2.C.1.1.1.	0.661
ABI64375.1	ABI65166.1	Mmar10_0079	Mmar10_0873	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xoo:XOO0390 TonB-like protein; TC 2.C.1.1.1.	Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	0.697
ABI64375.1	ABI65167.1	Mmar10_0079	Mmar10_0874	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xoo:XOO0390 TonB-like protein; TC 2.C.1.1.1.	SMART: Tetratricopeptide domain protein; KEGG: noc:Noc_0611 TPR repeat protein.	0.764
ABI64375.1	ABI65168.1	Mmar10_0079	Mmar10_0875	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xoo:XOO0390 TonB-like protein; TC 2.C.1.1.1.	KEGG: noc:Noc_0611 TPR repeat protein.	0.683
ABI64375.1	ABI65169.1	Mmar10_0079	Mmar10_0876	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xoo:XOO0390 TonB-like protein; TC 2.C.1.1.1.	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; KEGG: ilo:IL1855 TonB-like periplasmic protein; TC 2.C.1.1.1.	0.470
ABI64375.1	ABI65343.1	Mmar10_0079	Mmar10_1050	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xoo:XOO0390 TonB-like protein; TC 2.C.1.1.1.	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_4276 TonB-dependent receptor.	0.477
ABI64375.1	ABI65466.1	Mmar10_0079	Mmar10_1173	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xoo:XOO0390 TonB-like protein; TC 2.C.1.1.1.	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sdn:Sden_2422 biopolymer transport protein ExbD/TolR; TC 2.C.1.1.1.	0.656
ABI64375.1	ABI66102.1	Mmar10_0079	Mmar10_1810	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xoo:XOO0390 TonB-like protein; TC 2.C.1.1.1.	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eli:ELI_01455 hypothetical protein.	0.428
ABI64375.1	ABI66182.1	Mmar10_0079	Mmar10_1890	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xoo:XOO0390 TonB-like protein; TC 2.C.1.1.1.	Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.	0.490
ABI64375.1	ABI66274.1	Mmar10_0079	Mmar10_1982	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xoo:XOO0390 TonB-like protein; TC 2.C.1.1.1.	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: aci:ACIAD1534 putative TonB-dependent receptor protein (outer membrane salicin receptor).	0.616
ABI64375.1	ABI66284.1	Mmar10_0079	Mmar10_1992	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xoo:XOO0390 TonB-like protein; TC 2.C.1.1.1.	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: vvy:VVA0278 outer membrane receptor protein.	0.598
ABI64375.1	ABI66697.1	Mmar10_0079	Mmar10_2405	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xoo:XOO0390 TonB-like protein; TC 2.C.1.1.1.	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ccr:CC0454 TonB-dependent receptor.	0.477
ABI64375.1	ABI66800.1	Mmar10_0079	Mmar10_2514	Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xoo:XOO0390 TonB-like protein; TC 2.C.1.1.1.	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eli:ELI_10805 TonB-dependent receptor.	0.618