(12 nodes) Carboxypeptidase activity network (Sulfitobacter marinus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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textmining

co-expression

protein homology

Your Input:
	SFS96856.1	D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4). (498 aa)
	SFS56747.1	Carboxypeptidase Taq; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues. (491 aa)
	SFS85001.1	L,D-transpeptidase catalytic domain. (166 aa)
	SFS85049.1	L,D-transpeptidase catalytic domain. (201 aa)
	SFS55964.1	Murein L,D-transpeptidase YcbB/YkuD. (542 aa)
	SFS50528.1	Penicillin-binding protein 1A. (851 aa)
	SFS96053.1	Peptidoglycan glycosyltransferase. (647 aa)
	SFS96649.1	L,D-transpeptidase catalytic domain. (183 aa)
	SFT00143.1	L,D-transpeptidase catalytic domain. (191 aa)
	SFT06912.1	Penicillin-binding protein, 1A family. (711 aa)
	SFS45359.1	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. (389 aa)
	SFT13408.1	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (535 aa)

Your Current Organism:

Sulfitobacter marinus

NCBI taxonomy Id: 394264
Other names: DSM 23422, JCM 13602, KCTC 12738, Sulfitobacter marinus Yoon et al. 2007, strain SW-265

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFS45359.1	SFS50528.1	SAMN04488040_0409	SAMN04488040_0670	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.	Penicillin-binding protein 1A.	0.919
SFS45359.1	SFS96053.1	SAMN04488040_0409	SAMN04488040_2484	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.	Peptidoglycan glycosyltransferase.	0.580
SFS45359.1	SFS96856.1	SAMN04488040_0409	SAMN04488040_2526	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.	D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4).	0.919
SFS45359.1	SFT06912.1	SAMN04488040_0409	SAMN04488040_2973	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.	Penicillin-binding protein, 1A family.	0.919
SFS45359.1	SFT13408.1	SAMN04488040_0409	SAMN04488040_3336	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	0.486
SFS50528.1	SFS45359.1	SAMN04488040_0670	SAMN04488040_0409	Penicillin-binding protein 1A.	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.	0.919
SFS50528.1	SFS96053.1	SAMN04488040_0670	SAMN04488040_2484	Penicillin-binding protein 1A.	Peptidoglycan glycosyltransferase.	0.731
SFS50528.1	SFT06912.1	SAMN04488040_0670	SAMN04488040_2973	Penicillin-binding protein 1A.	Penicillin-binding protein, 1A family.	0.962
SFS50528.1	SFT13408.1	SAMN04488040_0670	SAMN04488040_3336	Penicillin-binding protein 1A.	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	0.658
SFS55964.1	SFS85001.1	SAMN04488040_0942	SAMN04488040_2095	Murein L,D-transpeptidase YcbB/YkuD.	L,D-transpeptidase catalytic domain.	0.563
SFS55964.1	SFS85049.1	SAMN04488040_0942	SAMN04488040_2097	Murein L,D-transpeptidase YcbB/YkuD.	L,D-transpeptidase catalytic domain.	0.522
SFS55964.1	SFT00143.1	SAMN04488040_0942	SAMN04488040_2693	Murein L,D-transpeptidase YcbB/YkuD.	L,D-transpeptidase catalytic domain.	0.429
SFS85001.1	SFS55964.1	SAMN04488040_2095	SAMN04488040_0942	L,D-transpeptidase catalytic domain.	Murein L,D-transpeptidase YcbB/YkuD.	0.563
SFS85001.1	SFS85049.1	SAMN04488040_2095	SAMN04488040_2097	L,D-transpeptidase catalytic domain.	L,D-transpeptidase catalytic domain.	0.666
SFS85001.1	SFS96649.1	SAMN04488040_2095	SAMN04488040_2516	L,D-transpeptidase catalytic domain.	L,D-transpeptidase catalytic domain.	0.465
SFS85001.1	SFT00143.1	SAMN04488040_2095	SAMN04488040_2693	L,D-transpeptidase catalytic domain.	L,D-transpeptidase catalytic domain.	0.715
SFS85049.1	SFS55964.1	SAMN04488040_2097	SAMN04488040_0942	L,D-transpeptidase catalytic domain.	Murein L,D-transpeptidase YcbB/YkuD.	0.522
SFS85049.1	SFS85001.1	SAMN04488040_2097	SAMN04488040_2095	L,D-transpeptidase catalytic domain.	L,D-transpeptidase catalytic domain.	0.666
SFS96053.1	SFS45359.1	SAMN04488040_2484	SAMN04488040_0409	Peptidoglycan glycosyltransferase.	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.	0.580
SFS96053.1	SFS50528.1	SAMN04488040_2484	SAMN04488040_0670	Peptidoglycan glycosyltransferase.	Penicillin-binding protein 1A.	0.731