(15 nodes) U2-type prespliceosome assembly, and Cleavage/polyadenylation specificity factor, A subunit, N-terminal network (Saimiri boliviensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SF3B6	Splicing factor 3b subunit 6. (125 aa)
	SF3B5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	SF3B4	Uncharacterized protein. (424 aa)
	ENSSBOP00000004781	Uncharacterized protein. (91 aa)
	SF3B1	Splicing factor 3b subunit 1. (1304 aa)
	SF3A1	Splicing factor 3a subunit 1. (773 aa)
	PHF5A	Uncharacterized protein. (107 aa)
	ENSSBOP00000017030	Uncharacterized protein. (393 aa)
	SF3A2	Splicing factor 3a subunit 2. (424 aa)
	SF3B2	Splicing factor 3b subunit 2. (886 aa)
	DDX46	DEAD-box helicase 46. (874 aa)
	SF3B3	Splicing factor 3b subunit 3. (1217 aa)
	LRMDA	Leucine rich melanocyte differentiation associated. (226 aa)
	DDX42	DEAD-box helicase 42. (933 aa)
	SF3A3	Matrin-type domain-containing protein. (418 aa)

Your Current Organism:

Saimiri boliviensis

NCBI taxonomy Id: 39432
Other names: Bolivian squirrel monkey, S. boliviensis boliviensis, Saimiri boliviensis boliviensis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX42	DDX46	ENSSBOP00000026382	ENSSBOP00000022265	DEAD-box helicase 42.	DEAD-box helicase 46.	0.611
DDX42	ENSSBOP00000004781	ENSSBOP00000026382	ENSSBOP00000004781	DEAD-box helicase 42.	Uncharacterized protein.	0.853
DDX42	ENSSBOP00000017030	ENSSBOP00000026382	ENSSBOP00000017030	DEAD-box helicase 42.	Uncharacterized protein.	0.799
DDX42	LRMDA	ENSSBOP00000026382	ENSSBOP00000025818	DEAD-box helicase 42.	Leucine rich melanocyte differentiation associated.	0.450
DDX42	PHF5A	ENSSBOP00000026382	ENSSBOP00000016855	DEAD-box helicase 42.	Uncharacterized protein.	0.984
DDX42	SF3A1	ENSSBOP00000026382	ENSSBOP00000010467	DEAD-box helicase 42.	Splicing factor 3a subunit 1.	0.738
DDX42	SF3A2	ENSSBOP00000026382	ENSSBOP00000018950	DEAD-box helicase 42.	Splicing factor 3a subunit 2.	0.964
DDX42	SF3A3	ENSSBOP00000026382	ENSSBOP00000033021	DEAD-box helicase 42.	Matrin-type domain-containing protein.	0.565
DDX42	SF3B1	ENSSBOP00000026382	ENSSBOP00000006307	DEAD-box helicase 42.	Splicing factor 3b subunit 1.	0.999
DDX42	SF3B2	ENSSBOP00000026382	ENSSBOP00000019696	DEAD-box helicase 42.	Splicing factor 3b subunit 2.	0.939
DDX42	SF3B3	ENSSBOP00000026382	ENSSBOP00000025382	DEAD-box helicase 42.	Splicing factor 3b subunit 3.	0.998
DDX42	SF3B4	ENSSBOP00000026382	ENSSBOP00000002367	DEAD-box helicase 42.	Uncharacterized protein.	0.979
DDX42	SF3B5	ENSSBOP00000026382	ENSSBOP00000001262	DEAD-box helicase 42.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.997
DDX42	SF3B6	ENSSBOP00000026382	ENSSBOP00000000644	DEAD-box helicase 42.	Splicing factor 3b subunit 6.	0.989
DDX46	DDX42	ENSSBOP00000022265	ENSSBOP00000026382	DEAD-box helicase 46.	DEAD-box helicase 42.	0.611
DDX46	ENSSBOP00000004781	ENSSBOP00000022265	ENSSBOP00000004781	DEAD-box helicase 46.	Uncharacterized protein.	0.956
DDX46	ENSSBOP00000017030	ENSSBOP00000022265	ENSSBOP00000017030	DEAD-box helicase 46.	Uncharacterized protein.	0.932
DDX46	LRMDA	ENSSBOP00000022265	ENSSBOP00000025818	DEAD-box helicase 46.	Leucine rich melanocyte differentiation associated.	0.931
DDX46	PHF5A	ENSSBOP00000022265	ENSSBOP00000016855	DEAD-box helicase 46.	Uncharacterized protein.	0.956
DDX46	SF3A1	ENSSBOP00000022265	ENSSBOP00000010467	DEAD-box helicase 46.	Splicing factor 3a subunit 1.	0.994