(36 nodes) Endodermal cell differentiation network (Saimiri boliviensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GRB2	Growth factor receptor bound protein 2. (184 aa)
	PAF1	PAF1 homolog, Paf1/RNA polymerase II complex component. (529 aa)
	RTF1	RTF1 homolog, Paf1/RNA polymerase II complex component. (705 aa)
	NR0B1	Nuclear receptor subfamily 0 group B member 1. (470 aa)
	LAMB1	Laminin subunit beta 1. (1766 aa)
	NODAL	Nodal growth differentiation factor. (347 aa)
	ITGA4	Integrin subunit alpha 4; Belongs to the integrin alpha chain family. (1033 aa)
	SETD2	SET domain containing 2, histone lysine methyltransferase. (2550 aa)
	ENSSBOP00000004140	Uncharacterized protein. (355 aa)
	MMP2	Matrix metallopeptidase 2. (661 aa)
	COL8A1	Collagen type VIII alpha 1 chain. (744 aa)
	MMP14	Matrix metallopeptidase 14. (582 aa)
	COL4A2	Collagen type IV alpha 2 chain. (1763 aa)
	MMP9	Matrix metallopeptidase 9. (703 aa)
	ITGAV	Integrin subunit alpha V; Belongs to the integrin alpha chain family. (1056 aa)
	INHBA	Inhibin subunit beta A. (426 aa)
	MMP15	Matrix metallopeptidase 15. (666 aa)
	ITGB5	Integrin beta; Belongs to the integrin beta chain family. (875 aa)
	ITGB2	Integrin beta. (769 aa)
	ITGA5	Integrin subunit alpha 5; Belongs to the integrin alpha chain family. (1023 aa)
	COL11A1	Collagen type XI alpha 1 chain. (1817 aa)
	CDC73	Uncharacterized protein. (291 aa)
	EOMES	Eomesodermin. (706 aa)
	CTNNB1	Catenin beta 1. (781 aa)
	COL12A1	Collagen type XII alpha 1 chain. (3041 aa)
	MIXL1	Mix paired-like homeobox. (136 aa)
	HMGA2	Uncharacterized protein. (81 aa)
	LEO1	LEO1 homolog, Paf1/RNA polymerase II complex component. (644 aa)
	COL7A1	Uncharacterized protein. (2939 aa)
	FN1	Fibronectin 1. (2478 aa)
	MMP8	Matrix metallopeptidase 8. (466 aa)
	LAMB3	Laminin subunit beta 3. (1172 aa)
	ITGA7	Integrin subunit alpha 7; Belongs to the integrin alpha chain family. (1181 aa)
	LAMA3	Laminin subunit alpha 3. (3306 aa)
	CTR9	CTR9 homolog, Paf1/RNA polymerase II complex component. (1173 aa)
	COL6A1	Collagen type VI alpha 1 chain. (965 aa)

Your Current Organism:

Saimiri boliviensis

NCBI taxonomy Id: 39432
Other names: Bolivian squirrel monkey, S. boliviensis boliviensis, Saimiri boliviensis boliviensis

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC73	CTNNB1	ENSSBOP00000022889	ENSSBOP00000025816	Uncharacterized protein.	Catenin beta 1.	0.728
CDC73	CTR9	ENSSBOP00000022889	ENSSBOP00000033632	Uncharacterized protein.	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.988
CDC73	LEO1	ENSSBOP00000022889	ENSSBOP00000028599	Uncharacterized protein.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.999
CDC73	PAF1	ENSSBOP00000022889	ENSSBOP00000035200	Uncharacterized protein.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.984
CDC73	RTF1	ENSSBOP00000022889	ENSSBOP00000035785	Uncharacterized protein.	RTF1 homolog, Paf1/RNA polymerase II complex component.	0.970
CDC73	SETD2	ENSSBOP00000022889	ENSSBOP00000004055	Uncharacterized protein.	SET domain containing 2, histone lysine methyltransferase.	0.457
COL12A1	COL4A2	ENSSBOP00000026825	ENSSBOP00000011138	Collagen type XII alpha 1 chain.	Collagen type IV alpha 2 chain.	0.668
COL12A1	MMP2	ENSSBOP00000026825	ENSSBOP00000031465	Collagen type XII alpha 1 chain.	Matrix metallopeptidase 2.	0.407
COL4A2	COL12A1	ENSSBOP00000011138	ENSSBOP00000026825	Collagen type IV alpha 2 chain.	Collagen type XII alpha 1 chain.	0.668
COL4A2	COL6A1	ENSSBOP00000011138	ENSSBOP00000034206	Collagen type IV alpha 2 chain.	Collagen type VI alpha 1 chain.	0.432
COL4A2	COL7A1	ENSSBOP00000011138	ENSSBOP00000029159	Collagen type IV alpha 2 chain.	Uncharacterized protein.	0.668
COL4A2	LAMA3	ENSSBOP00000011138	ENSSBOP00000032668	Collagen type IV alpha 2 chain.	Laminin subunit alpha 3.	0.410
COL4A2	LAMB1	ENSSBOP00000011138	ENSSBOP00000036889	Collagen type IV alpha 2 chain.	Laminin subunit beta 1.	0.529
COL4A2	LAMB3	ENSSBOP00000011138	ENSSBOP00000030453	Collagen type IV alpha 2 chain.	Laminin subunit beta 3.	0.404
COL4A2	MMP2	ENSSBOP00000011138	ENSSBOP00000031465	Collagen type IV alpha 2 chain.	Matrix metallopeptidase 2.	0.430
COL6A1	COL4A2	ENSSBOP00000034206	ENSSBOP00000011138	Collagen type VI alpha 1 chain.	Collagen type IV alpha 2 chain.	0.432
COL6A1	COL8A1	ENSSBOP00000034206	ENSSBOP00000020786	Collagen type VI alpha 1 chain.	Collagen type VIII alpha 1 chain.	0.416
COL6A1	ITGA5	ENSSBOP00000034206	ENSSBOP00000005491	Collagen type VI alpha 1 chain.	Integrin subunit alpha 5; Belongs to the integrin alpha chain family.	0.417
COL6A1	LAMB1	ENSSBOP00000034206	ENSSBOP00000036889	Collagen type VI alpha 1 chain.	Laminin subunit beta 1.	0.572
COL7A1	COL4A2	ENSSBOP00000029159	ENSSBOP00000011138	Uncharacterized protein.	Collagen type IV alpha 2 chain.	0.668