(14 nodes) CHD-type complex network (Saimiri boliviensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSBOP00000021549	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. (421 aa)
	GATAD2A	GATA zinc finger domain containing 2A. (634 aa)
	MTA1	Metastasis associated 1. (697 aa)
	MTA3	Metastasis associated 1 family member 3. (621 aa)
	MBD3	Methyl-CpG binding domain protein 3. (272 aa)
	ENSSBOP00000039148	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. (392 aa)
	ENSSBOP00000037087	Hist_deacetyl domain-containing protein. (226 aa)
	CHD5	Chromodomain helicase DNA binding protein 5. (1908 aa)
	ENSSBOP00000002041	Uncharacterized protein. (199 aa)
	MTA2	Metastasis associated 1 family member 2. (668 aa)
	CHD3	Chromodomain helicase DNA binding protein 3. (2000 aa)
	CHD4	Uncharacterized protein. (1881 aa)
	HDAC1	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. (482 aa)
	HDAC2	Hist_deacetyl domain-containing protein. (314 aa)

Your Current Organism:

Saimiri boliviensis

NCBI taxonomy Id: 39432
Other names: Bolivian squirrel monkey, S. boliviensis boliviensis, Saimiri boliviensis boliviensis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHD3	CHD4	ENSSBOP00000007875	ENSSBOP00000008724	Chromodomain helicase DNA binding protein 3.	Uncharacterized protein.	0.919
CHD3	ENSSBOP00000002041	ENSSBOP00000007875	ENSSBOP00000002041	Chromodomain helicase DNA binding protein 3.	Uncharacterized protein.	0.678
CHD3	ENSSBOP00000021549	ENSSBOP00000007875	ENSSBOP00000021549	Chromodomain helicase DNA binding protein 3.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.776
CHD3	ENSSBOP00000037087	ENSSBOP00000007875	ENSSBOP00000037087	Chromodomain helicase DNA binding protein 3.	Hist_deacetyl domain-containing protein.	0.835
CHD3	ENSSBOP00000039148	ENSSBOP00000007875	ENSSBOP00000039148	Chromodomain helicase DNA binding protein 3.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.776
CHD3	GATAD2A	ENSSBOP00000007875	ENSSBOP00000026134	Chromodomain helicase DNA binding protein 3.	GATA zinc finger domain containing 2A.	0.940
CHD3	HDAC1	ENSSBOP00000007875	ENSSBOP00000018138	Chromodomain helicase DNA binding protein 3.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.776
CHD3	HDAC2	ENSSBOP00000007875	ENSSBOP00000019047	Chromodomain helicase DNA binding protein 3.	Hist_deacetyl domain-containing protein.	0.835
CHD3	MBD3	ENSSBOP00000007875	ENSSBOP00000029978	Chromodomain helicase DNA binding protein 3.	Methyl-CpG binding domain protein 3.	0.785
CHD3	MTA1	ENSSBOP00000007875	ENSSBOP00000027735	Chromodomain helicase DNA binding protein 3.	Metastasis associated 1.	0.940
CHD3	MTA2	ENSSBOP00000007875	ENSSBOP00000006414	Chromodomain helicase DNA binding protein 3.	Metastasis associated 1 family member 2.	0.943
CHD3	MTA3	ENSSBOP00000007875	ENSSBOP00000028371	Chromodomain helicase DNA binding protein 3.	Metastasis associated 1 family member 3.	0.911
CHD4	CHD3	ENSSBOP00000008724	ENSSBOP00000007875	Uncharacterized protein.	Chromodomain helicase DNA binding protein 3.	0.919
CHD4	ENSSBOP00000002041	ENSSBOP00000008724	ENSSBOP00000002041	Uncharacterized protein.	Uncharacterized protein.	0.712
CHD4	ENSSBOP00000021549	ENSSBOP00000008724	ENSSBOP00000021549	Uncharacterized protein.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.848
CHD4	ENSSBOP00000037087	ENSSBOP00000008724	ENSSBOP00000037087	Uncharacterized protein.	Hist_deacetyl domain-containing protein.	0.900
CHD4	ENSSBOP00000039148	ENSSBOP00000008724	ENSSBOP00000039148	Uncharacterized protein.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.848
CHD4	GATAD2A	ENSSBOP00000008724	ENSSBOP00000026134	Uncharacterized protein.	GATA zinc finger domain containing 2A.	0.941
CHD4	HDAC1	ENSSBOP00000008724	ENSSBOP00000018138	Uncharacterized protein.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.968
CHD4	HDAC2	ENSSBOP00000008724	ENSSBOP00000019047	Uncharacterized protein.	Hist_deacetyl domain-containing protein.	0.979