(13 nodes) Peptidase C1A, papain C-terminal network (Saimiri boliviensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CTSW	Cathepsin W; Belongs to the peptidase C1 family. (373 aa)
	TINAGL1	Tubulointerstitial nephritis antigen like 1; Belongs to the peptidase C1 family. (513 aa)
	CTSV	Cathepsin V; Belongs to the peptidase C1 family. (333 aa)
	TINAG	Tubulointerstitial nephritis antigen; Belongs to the peptidase C1 family. (458 aa)
	CTSC	Cathepsin C; Belongs to the peptidase C1 family. (463 aa)
	CTSZ	Cathepsin Z; Belongs to the peptidase C1 family. (250 aa)
	CTSK	Cathepsin K; Belongs to the peptidase C1 family. (329 aa)
	CTSS	Cathepsin S; Thiol protease. Key protease responsible for the removal of the invariant chain from MHC class II molecules. The bond-specificity of this proteinase is in part similar to the specificities of cathepsin L (By similarity). (339 aa)
	CTSL	Cathepsin L; Belongs to the peptidase C1 family. (333 aa)
	CTSB	Cathepsin B; Belongs to the peptidase C1 family. (339 aa)
	CTSO	Cathepsin O; Belongs to the peptidase C1 family. (319 aa)
	CTSF	Cathepsin F; Belongs to the peptidase C1 family. (413 aa)
	CTSH	Cathepsin H; Belongs to the peptidase C1 family. (336 aa)

Your Current Organism:

Saimiri boliviensis

NCBI taxonomy Id: 39432
Other names: Bolivian squirrel monkey, S. boliviensis boliviensis, Saimiri boliviensis boliviensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTSB	CTSC	ENSSBOP00000019257	ENSSBOP00000030291	Cathepsin B; Belongs to the peptidase C1 family.	Cathepsin C; Belongs to the peptidase C1 family.	0.516
CTSB	CTSF	ENSSBOP00000019257	ENSSBOP00000012430	Cathepsin B; Belongs to the peptidase C1 family.	Cathepsin F; Belongs to the peptidase C1 family.	0.709
CTSB	CTSH	ENSSBOP00000019257	ENSSBOP00000011936	Cathepsin B; Belongs to the peptidase C1 family.	Cathepsin H; Belongs to the peptidase C1 family.	0.583
CTSB	CTSK	ENSSBOP00000019257	ENSSBOP00000024239	Cathepsin B; Belongs to the peptidase C1 family.	Cathepsin K; Belongs to the peptidase C1 family.	0.480
CTSB	CTSL	ENSSBOP00000019257	ENSSBOP00000019299	Cathepsin B; Belongs to the peptidase C1 family.	Cathepsin L; Belongs to the peptidase C1 family.	0.957
CTSB	CTSO	ENSSBOP00000019257	ENSSBOP00000015524	Cathepsin B; Belongs to the peptidase C1 family.	Cathepsin O; Belongs to the peptidase C1 family.	0.421
CTSB	CTSS	ENSSBOP00000019257	ENSSBOP00000021880	Cathepsin B; Belongs to the peptidase C1 family.	Cathepsin S; Thiol protease. Key protease responsible for the removal of the invariant chain from MHC class II molecules. The bond-specificity of this proteinase is in part similar to the specificities of cathepsin L (By similarity).	0.956
CTSB	CTSV	ENSSBOP00000019257	ENSSBOP00000035312	Cathepsin B; Belongs to the peptidase C1 family.	Cathepsin V; Belongs to the peptidase C1 family.	0.522
CTSC	CTSB	ENSSBOP00000030291	ENSSBOP00000019257	Cathepsin C; Belongs to the peptidase C1 family.	Cathepsin B; Belongs to the peptidase C1 family.	0.516
CTSC	CTSF	ENSSBOP00000030291	ENSSBOP00000012430	Cathepsin C; Belongs to the peptidase C1 family.	Cathepsin F; Belongs to the peptidase C1 family.	0.612
CTSC	CTSH	ENSSBOP00000030291	ENSSBOP00000011936	Cathepsin C; Belongs to the peptidase C1 family.	Cathepsin H; Belongs to the peptidase C1 family.	0.448
CTSC	CTSK	ENSSBOP00000030291	ENSSBOP00000024239	Cathepsin C; Belongs to the peptidase C1 family.	Cathepsin K; Belongs to the peptidase C1 family.	0.431
CTSC	CTSL	ENSSBOP00000030291	ENSSBOP00000019299	Cathepsin C; Belongs to the peptidase C1 family.	Cathepsin L; Belongs to the peptidase C1 family.	0.431
CTSC	CTSS	ENSSBOP00000030291	ENSSBOP00000021880	Cathepsin C; Belongs to the peptidase C1 family.	Cathepsin S; Thiol protease. Key protease responsible for the removal of the invariant chain from MHC class II molecules. The bond-specificity of this proteinase is in part similar to the specificities of cathepsin L (By similarity).	0.431
CTSC	CTSV	ENSSBOP00000030291	ENSSBOP00000035312	Cathepsin C; Belongs to the peptidase C1 family.	Cathepsin V; Belongs to the peptidase C1 family.	0.431
CTSC	CTSZ	ENSSBOP00000030291	ENSSBOP00000025696	Cathepsin C; Belongs to the peptidase C1 family.	Cathepsin Z; Belongs to the peptidase C1 family.	0.596
CTSF	CTSB	ENSSBOP00000012430	ENSSBOP00000019257	Cathepsin F; Belongs to the peptidase C1 family.	Cathepsin B; Belongs to the peptidase C1 family.	0.709
CTSF	CTSC	ENSSBOP00000012430	ENSSBOP00000030291	Cathepsin F; Belongs to the peptidase C1 family.	Cathepsin C; Belongs to the peptidase C1 family.	0.612
CTSF	CTSH	ENSSBOP00000012430	ENSSBOP00000011936	Cathepsin F; Belongs to the peptidase C1 family.	Cathepsin H; Belongs to the peptidase C1 family.	0.482
CTSF	CTSK	ENSSBOP00000012430	ENSSBOP00000024239	Cathepsin F; Belongs to the peptidase C1 family.	Cathepsin K; Belongs to the peptidase C1 family.	0.501