(22 nodes) Spectrin repeat network (Saimiri boliviensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MACF1	Microtubule actin crosslinking factor 1. (7598 aa)
	SPTBN5	Spectrin beta, non-erythrocytic 5. (3665 aa)
	UTRN	Utrophin. (3434 aa)
	SPTBN4	Spectrin beta chain; Belongs to the spectrin family. (2339 aa)
	AKAP6	A-kinase anchoring protein 6. (2320 aa)
	DMD	Dystrophin. (3679 aa)
	SPTB	Spectrin beta chain; Belongs to the spectrin family. (2328 aa)
	DRP2	Dystrophin related protein 2. (957 aa)
	SYNE1	Spectrin repeat containing nuclear envelope protein 1. (8797 aa)
	SYNE2	Spectrin repeat containing nuclear envelope protein 2. (6840 aa)
	MCF2L	MCF.2 cell line derived transforming sequence like. (1234 aa)
	DST	Dystonin. (7439 aa)
	SPTA1	Spectrin alpha, erythrocytic 1. (2419 aa)
	SPTAN1	Spectrin alpha, non-erythrocytic 1. (2409 aa)
	SPTBN1	Spectrin beta chain; Belongs to the spectrin family. (2364 aa)
	KALRN	Kalirin RhoGEF kinase. (2985 aa)
	ACTN1	Actinin alpha 1. (914 aa)
	TRIO	Trio Rho guanine nucleotide exchange factor. (2979 aa)
	ACTN4	Actinin alpha 4. (930 aa)
	SPTBN2	Spectrin beta chain; Belongs to the spectrin family. (2345 aa)
	ACTN2	Actinin alpha 2. (791 aa)
	ACTN3	Actinin alpha 3 (gene/pseudogene). (915 aa)

Your Current Organism:

Saimiri boliviensis

NCBI taxonomy Id: 39432
Other names: Bolivian squirrel monkey, S. boliviensis boliviensis, Saimiri boliviensis boliviensis

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTN1	ACTN4	ENSSBOP00000024616	ENSSBOP00000026696	Actinin alpha 1.	Actinin alpha 4.	0.992
ACTN2	ACTN3	ENSSBOP00000029031	ENSSBOP00000036505	Actinin alpha 2.	Actinin alpha 3 (gene/pseudogene).	0.946
ACTN2	DMD	ENSSBOP00000029031	ENSSBOP00000010965	Actinin alpha 2.	Dystrophin.	0.425
ACTN3	ACTN2	ENSSBOP00000036505	ENSSBOP00000029031	Actinin alpha 3 (gene/pseudogene).	Actinin alpha 2.	0.946
ACTN3	DMD	ENSSBOP00000036505	ENSSBOP00000010965	Actinin alpha 3 (gene/pseudogene).	Dystrophin.	0.421
ACTN4	ACTN1	ENSSBOP00000026696	ENSSBOP00000024616	Actinin alpha 4.	Actinin alpha 1.	0.992
DMD	ACTN2	ENSSBOP00000010965	ENSSBOP00000029031	Dystrophin.	Actinin alpha 2.	0.425
DMD	ACTN3	ENSSBOP00000010965	ENSSBOP00000036505	Dystrophin.	Actinin alpha 3 (gene/pseudogene).	0.421
DMD	UTRN	ENSSBOP00000010965	ENSSBOP00000004134	Dystrophin.	Utrophin.	0.797
DST	SPTAN1	ENSSBOP00000021642	ENSSBOP00000022227	Dystonin.	Spectrin alpha, non-erythrocytic 1.	0.562
MACF1	SPTAN1	ENSSBOP00000039619	ENSSBOP00000022227	Microtubule actin crosslinking factor 1.	Spectrin alpha, non-erythrocytic 1.	0.563
SPTA1	SPTAN1	ENSSBOP00000021660	ENSSBOP00000022227	Spectrin alpha, erythrocytic 1.	Spectrin alpha, non-erythrocytic 1.	0.929
SPTA1	SPTB	ENSSBOP00000021660	ENSSBOP00000013860	Spectrin alpha, erythrocytic 1.	Spectrin beta chain; Belongs to the spectrin family.	0.966
SPTA1	SPTBN1	ENSSBOP00000021660	ENSSBOP00000022293	Spectrin alpha, erythrocytic 1.	Spectrin beta chain; Belongs to the spectrin family.	0.851
SPTA1	SPTBN2	ENSSBOP00000021660	ENSSBOP00000028196	Spectrin alpha, erythrocytic 1.	Spectrin beta chain; Belongs to the spectrin family.	0.795
SPTA1	SPTBN4	ENSSBOP00000021660	ENSSBOP00000006221	Spectrin alpha, erythrocytic 1.	Spectrin beta chain; Belongs to the spectrin family.	0.829
SPTA1	SPTBN5	ENSSBOP00000021660	ENSSBOP00000000802	Spectrin alpha, erythrocytic 1.	Spectrin beta, non-erythrocytic 5.	0.832
SPTAN1	DST	ENSSBOP00000022227	ENSSBOP00000021642	Spectrin alpha, non-erythrocytic 1.	Dystonin.	0.562
SPTAN1	MACF1	ENSSBOP00000022227	ENSSBOP00000039619	Spectrin alpha, non-erythrocytic 1.	Microtubule actin crosslinking factor 1.	0.563
SPTAN1	SPTA1	ENSSBOP00000022227	ENSSBOP00000021660	Spectrin alpha, non-erythrocytic 1.	Spectrin alpha, erythrocytic 1.	0.929