(14 nodes) Arrestin-like, C-terminal network (Saimiri boliviensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARRDC5	Arrestin domain containing 5. (342 aa)
	ARRDC1	Arrestin domain containing 1. (465 aa)
	ARRB1	Arrestin beta 1. (413 aa)
	ARRDC4	Arrestin domain containing 4. (418 aa)
	ARRB2	Arrestin beta 2. (469 aa)
	VPS26A	VPS26, retromer complex component A. (327 aa)
	SAG	S-antigen visual arrestin. (384 aa)
	ARRDC3	Arrestin domain containing 3. (430 aa)
	ENSSBOP00000031867	Uncharacterized protein. (325 aa)
	VPS26B	VPS26, retromer complex component B. (336 aa)
	DSCR3	Uncharacterized protein. (297 aa)
	ARR3	Arrestin 3. (386 aa)
	ARRDC2	Arrestin domain containing 2. (407 aa)
	TXNIP	Thioredoxin interacting protein. (395 aa)

Your Current Organism:

Saimiri boliviensis

NCBI taxonomy Id: 39432
Other names: Bolivian squirrel monkey, S. boliviensis boliviensis, Saimiri boliviensis boliviensis

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARRB1	ARRB2	ENSSBOP00000021631	ENSSBOP00000015071	Arrestin beta 1.	Arrestin beta 2.	0.961
ARRB1	ARRDC3	ENSSBOP00000021631	ENSSBOP00000010882	Arrestin beta 1.	Arrestin domain containing 3.	0.433
ARRB2	ARRB1	ENSSBOP00000015071	ENSSBOP00000021631	Arrestin beta 2.	Arrestin beta 1.	0.961
ARRDC3	ARRB1	ENSSBOP00000010882	ENSSBOP00000021631	Arrestin domain containing 3.	Arrestin beta 1.	0.433
ARRDC5	DSCR3	ENSSBOP00000005252	ENSSBOP00000001009	Arrestin domain containing 5.	Uncharacterized protein.	0.446
ARRDC5	ENSSBOP00000031867	ENSSBOP00000005252	ENSSBOP00000031867	Arrestin domain containing 5.	Uncharacterized protein.	0.446
ARRDC5	TXNIP	ENSSBOP00000005252	ENSSBOP00000017612	Arrestin domain containing 5.	Thioredoxin interacting protein.	0.513
DSCR3	ARRDC5	ENSSBOP00000001009	ENSSBOP00000005252	Uncharacterized protein.	Arrestin domain containing 5.	0.446
ENSSBOP00000031867	ARRDC5	ENSSBOP00000031867	ENSSBOP00000005252	Uncharacterized protein.	Arrestin domain containing 5.	0.446
TXNIP	ARRDC5	ENSSBOP00000017612	ENSSBOP00000005252	Thioredoxin interacting protein.	Arrestin domain containing 5.	0.513
VPS26A	VPS26B	ENSSBOP00000027290	ENSSBOP00000026004	VPS26, retromer complex component A.	VPS26, retromer complex component B.	0.976
VPS26B	VPS26A	ENSSBOP00000026004	ENSSBOP00000027290	VPS26, retromer complex component B.	VPS26, retromer complex component A.	0.976