(23 nodes) Peptidase M10A, catalytic domain network (Saimiri boliviensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MMP28	Matrix metallopeptidase 28. (498 aa)
	MMP13	Matrix metallopeptidase 13. (471 aa)
	MMP19	Matrix metallopeptidase 19. (480 aa)
	MMP1	Matrix metallopeptidase 1. (469 aa)
	MMP3	Matrix metallopeptidase 3. (477 aa)
	MMP2	Matrix metallopeptidase 2. (661 aa)
	MMP15	Matrix metallopeptidase 15. (666 aa)
	MMP7	Matrix metallopeptidase 7. (270 aa)
	MMP17	Matrix metallopeptidase 17. (538 aa)
	MMP11	Matrix metallopeptidase 11. (452 aa)
	MMP20	Matrix metallopeptidase 20. (483 aa)
	MMP9	Matrix metallopeptidase 9. (703 aa)
	MMP8	Matrix metallopeptidase 8. (466 aa)
	MMP16	Matrix metallopeptidase 16. (607 aa)
	MMP25	Matrix metallopeptidase 25. (561 aa)
	MMP10	Matrix metallopeptidase 10. (477 aa)
	MMP12	Matrix metallopeptidase 12. (469 aa)
	MMP24	Matrix metallopeptidase 24. (563 aa)
	MMP26	Matrix metallopeptidase 26. (258 aa)
	MMP14	Matrix metallopeptidase 14. (582 aa)
	MMP27	Matrix metallopeptidase 27. (513 aa)
	MMP23B	Matrix metallopeptidase 23B. (390 aa)
	MMP21	Matrix metallopeptidase 21. (511 aa)

Your Current Organism:

Saimiri boliviensis

NCBI taxonomy Id: 39432
Other names: Bolivian squirrel monkey, S. boliviensis boliviensis, Saimiri boliviensis boliviensis

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MMP1	MMP10	ENSSBOP00000035927	ENSSBOP00000026694	Matrix metallopeptidase 1.	Matrix metallopeptidase 10.	0.551
MMP1	MMP11	ENSSBOP00000035927	ENSSBOP00000016993	Matrix metallopeptidase 1.	Matrix metallopeptidase 11.	0.507
MMP1	MMP12	ENSSBOP00000035927	ENSSBOP00000023747	Matrix metallopeptidase 1.	Matrix metallopeptidase 12.	0.484
MMP1	MMP13	ENSSBOP00000035927	ENSSBOP00000039879	Matrix metallopeptidase 1.	Matrix metallopeptidase 13.	0.436
MMP1	MMP14	ENSSBOP00000035927	ENSSBOP00000020532	Matrix metallopeptidase 1.	Matrix metallopeptidase 14.	0.449
MMP1	MMP15	ENSSBOP00000035927	ENSSBOP00000007890	Matrix metallopeptidase 1.	Matrix metallopeptidase 15.	0.401
MMP1	MMP2	ENSSBOP00000035927	ENSSBOP00000031465	Matrix metallopeptidase 1.	Matrix metallopeptidase 2.	0.959
MMP1	MMP20	ENSSBOP00000035927	ENSSBOP00000013636	Matrix metallopeptidase 1.	Matrix metallopeptidase 20.	0.450
MMP1	MMP26	ENSSBOP00000035927	ENSSBOP00000020870	Matrix metallopeptidase 1.	Matrix metallopeptidase 26.	0.466
MMP1	MMP3	ENSSBOP00000035927	ENSSBOP00000033939	Matrix metallopeptidase 1.	Matrix metallopeptidase 3.	0.964
MMP1	MMP7	ENSSBOP00000035927	ENSSBOP00000019880	Matrix metallopeptidase 1.	Matrix metallopeptidase 7.	0.599
MMP1	MMP9	ENSSBOP00000035927	ENSSBOP00000009376	Matrix metallopeptidase 1.	Matrix metallopeptidase 9.	0.956
MMP10	MMP1	ENSSBOP00000026694	ENSSBOP00000035927	Matrix metallopeptidase 10.	Matrix metallopeptidase 1.	0.551
MMP10	MMP11	ENSSBOP00000026694	ENSSBOP00000016993	Matrix metallopeptidase 10.	Matrix metallopeptidase 11.	0.577
MMP10	MMP13	ENSSBOP00000026694	ENSSBOP00000039879	Matrix metallopeptidase 10.	Matrix metallopeptidase 13.	0.460
MMP10	MMP14	ENSSBOP00000026694	ENSSBOP00000020532	Matrix metallopeptidase 10.	Matrix metallopeptidase 14.	0.484
MMP10	MMP15	ENSSBOP00000026694	ENSSBOP00000007890	Matrix metallopeptidase 10.	Matrix metallopeptidase 15.	0.409
MMP10	MMP3	ENSSBOP00000026694	ENSSBOP00000033939	Matrix metallopeptidase 10.	Matrix metallopeptidase 3.	0.746
MMP10	MMP7	ENSSBOP00000026694	ENSSBOP00000019880	Matrix metallopeptidase 10.	Matrix metallopeptidase 7.	0.597
MMP10	MMP8	ENSSBOP00000026694	ENSSBOP00000030394	Matrix metallopeptidase 10.	Matrix metallopeptidase 8.	0.480