STRINGSTRING
Ccel_0282 Ccel_0282 Ccel_1350 Ccel_1350 Ccel_1860 Ccel_1860 Ccel_2548 Ccel_2548 Ccel_2875 Ccel_2875 Ccel_2876 Ccel_2876 Ccel_2902 Ccel_2902 Ccel_2903 Ccel_2903 Ccel_2904 Ccel_2904 Ccel_2905 Ccel_2905 Ccel_2906 Ccel_2906 ftsE ftsE Ccel_2908 Ccel_2908 Ccel_2941 Ccel_2941 Ccel_3223 Ccel_3223
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ccel_0282PFAM: Peptidase M23; KEGG: cth:Cthe_2617 peptidase M23B. (263 aa)
Ccel_1350PFAM: cell wall hydrolase/autolysin; copper amine oxidase domain protein; KEGG: cth:Cthe_0185 cell wall hydrolase/autolysin. (529 aa)
Ccel_1860PFAM: Rhomboid family protein; KEGG: cth:Cthe_1048 rhomboid family protein. (519 aa)
Ccel_2548PFAM: Peptidase M23; KEGG: cth:Cthe_0097 peptidase M23B. (285 aa)
Ccel_2875PFAM: Peptidase M23; KEGG: cth:Cthe_1757 peptidase M23B. (282 aa)
Ccel_2876PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: cth:Cthe_1760 1A family penicillin-binding protein. (861 aa)
Ccel_2902PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cth:Cthe_1855 methyltransferase type 11. (248 aa)
Ccel_2903KEGG: cth:Cthe_1856 small acid-soluble spore protein beta. (55 aa)
Ccel_2904TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; KEGG: cth:Cthe_1857 carboxyl-terminal protease; Belongs to the peptidase S41A family. (415 aa)
Ccel_2905PFAM: Peptidase M23; KEGG: cth:Cthe_1858 peptidase M23B. (375 aa)
Ccel_2906Protein of unknown function DUF214; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. (304 aa)
ftsECell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division. (235 aa)
Ccel_2908Transcriptional regulator, CdaR; PFAM: helix-turn-helix Fis-type; KEGG: cth:Cthe_1861 CdaR family transcriptional regulator. (359 aa)
Ccel_2941PFAM: cell wall hydrolase/autolysin; KEGG: cth:Cthe_1037 cell wall hydrolase/autolysin. (250 aa)
Ccel_3223PFAM: cell wall hydrolase/autolysin; KEGG: esi:Exig_1130 cell wall hydrolase/autolysin. (257 aa)
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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