STRINGSTRING
Ccel_0462 Ccel_0462 Ccel_0463 Ccel_0463 Ccel_0464 Ccel_0464 Ccel_0465 Ccel_0465 Ccel_0471 Ccel_0471 Ccel_0472 Ccel_0472 lgt lgt Ccel_1069 Ccel_1069 Ccel_1070 Ccel_1070 Ccel_1071 Ccel_1071 Ccel_1072 Ccel_1072 Ccel_1102 Ccel_1102 Ccel_1681 Ccel_1681 Ccel_1685 Ccel_1685 Ccel_1686 Ccel_1686 Ccel_1687 Ccel_1687 Ccel_1688 Ccel_1688 Ccel_1689 Ccel_1689 Ccel_1690 Ccel_1690 Ccel_1691 Ccel_1691 Ccel_1706 Ccel_1706 Ccel_2156 Ccel_2156 Ccel_2197 Ccel_2197 Ccel_2232 Ccel_2232 Ccel_2233 Ccel_2233 Ccel_2234 Ccel_2234 Ccel_2235 Ccel_2235 Ccel_2236 Ccel_2236 Ccel_2296 Ccel_2296 Ccel_2297 Ccel_2297 Ccel_2298 Ccel_2298 Ccel_2299 Ccel_2299 Ccel_2300 Ccel_2300 Ccel_2301 Ccel_2301 Ccel_2302 Ccel_2302 Ccel_2303 Ccel_2303 Ccel_2304 Ccel_2304 Ccel_2305 Ccel_2305 Ccel_2448 Ccel_2448 Ccel_2467 Ccel_2467 Ccel_2922 Ccel_2922 Ccel_3103 Ccel_3103 Ccel_3104 Ccel_3104 Ccel_3105 Ccel_3105 Ccel_3106 Ccel_3106 Ccel_3363 Ccel_3363 Ccel_3364 Ccel_3364 hypA hypA Ccel_3366 Ccel_3366 Ccel_3367 Ccel_3367 Ccel_3368 Ccel_3368 Ccel_3369 Ccel_3369 Ccel_3370 Ccel_3370 Ccel_3371 Ccel_3371
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ccel_0462TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: gsu:GSU0306 hydrogenase maturation protein HypF. (790 aa)
Ccel_0463TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: deb:DehaBAV1_1241 hydrogenase assembly chaperone HypC/HupF. (74 aa)
Ccel_0464TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: cac:CAC0811 hydrogenase expression-formation factor (HypD). (361 aa)
Ccel_0465TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: npu:Npun_R0359 hydrogenase expression/formation protein HypE. (337 aa)
Ccel_0471PFAM: peptidase M16 domain protein; KEGG: cth:Cthe_0986 peptidase M16-like protein. (434 aa)
Ccel_0472PFAM: peptidase M16 domain protein; KEGG: cth:Cthe_0985 peptidase M16-like protein. (427 aa)
lgtProlipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. (357 aa)
Ccel_1069PFAM: cytochrome b5; KEGG: cac:CA_P0144 steroid-binding protein. (149 aa)
Ccel_1070TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: cbl:CLK_1224 [Ni/Fe] hydrogenase, small subunit. (299 aa)
Ccel_1071PFAM: nickel-dependent hydrogenase large subunit; KEGG: cbb:CLD_2800 [Ni/Fe] hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (470 aa)
Ccel_1072TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: cac:CA_P0143 hydrogenase maturation protease delta subunit, HyaD-like. (154 aa)
Ccel_1102PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bfs:BF1698 putative ferredoxin. (260 aa)
Ccel_1681PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: cth:Cthe_1060 AIR synthase related protein-like protein. (330 aa)
Ccel_1685KEGG: cbl:CLK_1174 hypothetical protein. (91 aa)
Ccel_1686PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: rci:RCIX2382 hydrogenase, small subunit-like protein (HycG-like). (266 aa)
Ccel_1687PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: rci:RCIX2383 hydrogenase, large subunit-like protein (HycE-like). (530 aa)
Ccel_1688PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rci:RCIX2384 hydrogenase, membrane subunit 1-like protein (EchA-like). (495 aa)
Ccel_1689KEGG: rci:RCIX2385 hydrogenase, membrane subunit 2-like protein. (220 aa)
Ccel_1690KEGG: rpd:RPD_3854 respiratory-chain NADH dehydrogenase, subunit 1. (312 aa)
Ccel_1691PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rci:RCIX2387 hydrogenase, membrane subunit 4-like protein (HycC-like). (688 aa)
Ccel_1706PFAM: peptidase M16 domain protein; KEGG: cth:Cthe_0419 peptidase M16-like protein. (411 aa)
Ccel_2156PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: nar:Saro_0231 esterase/lipase/thioesterase. (311 aa)
Ccel_2197KEGG: cdf:CD0474 putative iron-sulfur protein. (268 aa)
Ccel_2232TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: cth:Cthe_0342 hydrogenase, Fe-only. (582 aa)
Ccel_2233PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: cth:Cthe_0341 NADH dehydrogenase (quinone). (597 aa)
Ccel_2234Ferredoxin; KEGG: cth:Cthe_0340 ferredoxin. (123 aa)
Ccel_2235Histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: cth:Cthe_0339 histidine kinase. (188 aa)
Ccel_2236TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: cth:Cthe_0338 NADH-quinone oxidoreductase, E subunit. (163 aa)
Ccel_2296KEGG: cth:Cthe_0454 hypothetical protein. (124 aa)
Ccel_2297PFAM: Integral membrane protein TerC; KEGG: ckl:CKL_2793 hypothetical protein. (286 aa)
Ccel_2298PFAM: transposase IS605 OrfB; KEGG: tma:TM1831 transposase, putative. (491 aa)
Ccel_2299PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: cbh:CLC_1773 sporulation domain-containing protein. (390 aa)
Ccel_2300KEGG: cpy:Cphy_0092 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; SMART: PAS domain containing protein. (574 aa)
Ccel_2301KEGG: cbl:CLK_1211 hypothetical protein. (86 aa)
Ccel_2302Hypothetical protein. (64 aa)
Ccel_2303TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: aoe:Clos_0990 hydrogenase, Fe-only. (562 aa)
Ccel_2304PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: aoe:Clos_0989 NADH dehydrogenase (quinone). (623 aa)
Ccel_2305PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: aoe:Clos_0988 NADH dehydrogenase (ubiquinone) 24 kDa subunit. (157 aa)
Ccel_2448PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: nth:Nther_0727 FAD dependent oxidoreductase. (510 aa)
Ccel_2467TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: cth:Cthe_0342 hydrogenase, Fe-only. (574 aa)
Ccel_2922KEGG: lsp:Bsph_2834 hypothetical protein. (625 aa)
Ccel_3103TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: bth:BT_1837 putative GTP-binding protein, putative GTPase. (396 aa)
Ccel_3104PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; KEGG: cbe:Cbei_4439 thiamine biosynthesis protein ThiH. (470 aa)
Ccel_3105KEGG: cbe:Cbei_4440 hypothetical protein. (81 aa)
Ccel_3106KEGG: cbe:Cbei_4697 Zn-finger containing protein. (130 aa)
Ccel_3363TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: det:DET1431 hydrogenase accessory protein HypB. (220 aa)
Ccel_3364PFAM: protein of unknown function UPF0126; KEGG: btl:BALH_4926 permease. (216 aa)
hypAHydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. (113 aa)
Ccel_3366PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: csc:Csac_1539 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein. (124 aa)
Ccel_3367PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: csc:Csac_1538 NADH-ubiquinone oxidoreductase, chain 49kDa; Belongs to the complex I 49 kDa subunit family. (359 aa)
Ccel_3368PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: csc:Csac_1537 NADH dehydrogenase (ubiquinone), 30 kDa subunit. (126 aa)
Ccel_3369PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: csc:Csac_1536 NADH ubiquinone oxidoreductase, 20 kDa subunit. (149 aa)
Ccel_3370PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: csc:Csac_1535 respiratory-chain NADH dehydrogenase, subunit 1. (283 aa)
Ccel_3371PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: dvl:Dvul_2501 NADH dehydrogenase (quinone). (661 aa)
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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