STRINGSTRING
Ccel_0924 Ccel_0924 thiI thiI Ccel_1684 Ccel_1684 Ccel_1928 Ccel_1928 Ccel_1929 Ccel_1929 mnmA mnmA Ccel_1931 Ccel_1931 iscS iscS Ccel_1933 Ccel_1933 Ccel_1934 Ccel_1934 Ccel_1935 Ccel_1935 Ccel_1936 Ccel_1936 Ccel_1938 Ccel_1938 Ccel_1939 Ccel_1939
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ccel_0924TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: cth:Cthe_1558 BadM/Rrf2 family transcriptional regulator. (148 aa)
thiIThiamine biosynthesis/tRNA modification protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. (392 aa)
Ccel_1684PFAM: aminotransferase class V; KEGG: cth:Cthe_1064 aminotransferase, class V. (387 aa)
Ccel_1928KEGG: ckl:CKL_3623 hypothetical protein. (62 aa)
Ccel_1929KEGG: nth:Nther_2705 hypothetical protein. (519 aa)
mnmAtRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. (359 aa)
Ccel_1931TIGRFAM: FeS cluster assembly scaffold protein NifU; PFAM: nitrogen-fixing NifU domain protein; KEGG: cth:Cthe_0721 nitrogen-fixing NifU-like protein. (153 aa)
iscSCysteine desulfurase NifS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. (393 aa)
Ccel_1933TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: cth:Cthe_0719 BadM/Rrf2 family transcriptional regulator. (148 aa)
Ccel_1934KEGG: cth:Cthe_0718 hypothetical protein. (92 aa)
Ccel_1935Hypothetical protein. (79 aa)
Ccel_1936PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cth:Cthe_0617 recombination factor protein RarA. (432 aa)
Ccel_1938PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; KEGG: csc:Csac_2307 2-alkenal reductase. (377 aa)
Ccel_19392'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. (181 aa)
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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