STRINGSTRING
Ccel_0502 Ccel_0502 Ccel_0503 Ccel_0503 Ccel_0504 Ccel_0504 Ccel_0505 Ccel_0505 Ccel_0507 Ccel_0507 Ccel_0508 Ccel_0508 Ccel_0509 Ccel_0509 Ccel_0510 Ccel_0510 Ccel_0511 Ccel_0511 Ccel_0512 Ccel_0512
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ccel_0502Hypothetical protein; KEGG: cac:CAC0037 MinD family ATPase. (378 aa)
Ccel_0503PFAM: type II secretion system protein E; KEGG: cth:Cthe_1339 type II secretion system protein E. (411 aa)
Ccel_0504KEGG: cth:Cthe_1338 Flp pilus assembly protein TadB-like protein. (247 aa)
Ccel_0505Hypothetical protein; KEGG: cth:Cthe_1337 type II secretion system protein. (241 aa)
Ccel_0507KEGG: cth:Cthe_1336 hypothetical protein. (198 aa)
Ccel_0508Hypothetical protein; KEGG: cth:Cthe_1835 viral A-type inclusion repeat-containing protein. (715 aa)
Ccel_0509KEGG: cth:Cthe_1830 hypothetical protein. (354 aa)
Ccel_0510PFAM: peptidase A24A prepilin type IV; KEGG: cth:Cthe_1335 peptidase A24A, prepilin type IV. (182 aa)
Ccel_0511PFAM: Forkhead-associated protein; KEGG: cth:Cthe_1334 FHA domain-containing protein. (475 aa)
Ccel_0512PFAM: peptidase A24A prepilin type IV; KEGG: cth:Cthe_0545 prepilin peptidase CpaA. (167 aa)
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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