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Ccel_0092 Ccel_0092 Ccel_0093 Ccel_0093 Ccel_0094 Ccel_0094 flgK flgK Ccel_0096 Ccel_0096 Ccel_0097 Ccel_0097 fliW fliW csrA csrA Ccel_0100 Ccel_0100 Ccel_0101 Ccel_0101 Ccel_0102 Ccel_0102 Ccel_0104 Ccel_0104 Ccel_0105 Ccel_0105 Ccel_0106 Ccel_0106 Ccel_0263 Ccel_0263 Ccel_0264 Ccel_0264 Ccel_0398 Ccel_0398 Ccel_0399 Ccel_0399 Ccel_0400 Ccel_0400 Ccel_0401 Ccel_0401 Ccel_2021 Ccel_2021 Ccel_2022 Ccel_2022 Ccel_2029 Ccel_2029 Ccel_2030 Ccel_2030 flhA flhA flhB flhB Ccel_2033 Ccel_2033 fliQ fliQ fliP fliP Ccel_2036 Ccel_2036 Ccel_2038 Ccel_2038 Ccel_2039 Ccel_2039 Ccel_2042 Ccel_2042 Ccel_2043 Ccel_2043 Ccel_2044 Ccel_2044 Ccel_2045 Ccel_2045 Ccel_2046 Ccel_2046 Ccel_2047 Ccel_2047 Ccel_2048 Ccel_2048 Ccel_2049 Ccel_2049 Ccel_2050 Ccel_2050 Ccel_2051 Ccel_2051 fliE fliE Ccel_2053 Ccel_2053 Ccel_2054 Ccel_2054 Ccel_3099 Ccel_3099 Ccel_3100 Ccel_3100 Ccel_3101 Ccel_3101 Ccel_3361 Ccel_3361
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ccel_0092PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: cth:Cthe_2246 anti-sigma-28 factor, FlgM. (95 aa)
Ccel_0093PFAM: FlgN family protein; KEGG: cth:Cthe_2245 hypothetical protein. (166 aa)
Ccel_0094TIGRFAM: flagellar hook-associated protein FlgK; PFAM: von Willebrand factor type A; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_2244 flagellar hook-associated protein FlgK. (708 aa)
flgKTIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_2243 flagellar hook-associated protein FlgK. (537 aa)
Ccel_0096TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: cth:Cthe_2242 flagellar hook-associated protein FlgL. (309 aa)
Ccel_0097KEGG: cth:Cthe_2241 hypothetical protein. (193 aa)
fliWProtein of unknown function DUF180; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. (148 aa)
csrACarbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. (72 aa)
Ccel_0100Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (273 aa)
Ccel_0101Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (273 aa)
Ccel_0102Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (276 aa)
Ccel_0104PFAM: flagellar protein FlaG protein; KEGG: cth:Cthe_2219 flagellar protein FlaG protein. (128 aa)
Ccel_0105Flagellar hook-associated 2 domain protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. (778 aa)
Ccel_0106PFAM: flagellar protein FliS; KEGG: cth:Cthe_2217 flagellar protein FliS. (134 aa)
Ccel_0263PFAM: OmpA/MotB domain protein; KEGG: ckl:CKL_3788 hypothetical protein. (259 aa)
Ccel_0264PFAM: MotA/TolQ/ExbB proton channel; KEGG: csc:Csac_1524 MotA/TolQ/ExbB proton channel. (266 aa)
Ccel_0398Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cth:Cthe_2898 anti-sigma-factor antagonist. (105 aa)
Ccel_0399KEGG: cth:Cthe_2899 putative anti-sigma regulatory factor, serine/threonine protein kinase. (128 aa)
Ccel_0400TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: cth:Cthe_2900 RNA polymerase, sigma 28 subunit. (249 aa)
Ccel_0401KEGG: cth:Cthe_2901 putative anti-sigma regulatory factor, serine/threonine protein kinase. (144 aa)
Ccel_2021PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_0498 hypothetical protein. (463 aa)
Ccel_2022TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cth:Cthe_0495 RNA polymerase, sigma 28 subunit. (254 aa)
Ccel_2029PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cth:Cthe_0487 cobyrinic acid a,c-diamide synthase. (301 aa)
Ccel_2030PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; KEGG: cth:Cthe_0486 GTP-binding signal recognition particle. (389 aa)
flhAFlagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. (674 aa)
flhBFlagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family. (381 aa)
Ccel_2033Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family. (265 aa)
fliQFlagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family. (89 aa)
fliPFlagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. (266 aa)
Ccel_2036KEGG: cth:Cthe_0480 hypothetical protein. (156 aa)
Ccel_2038CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: cth:Cthe_0478 flagellar motor switch protein. (402 aa)
Ccel_2039PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: cth:Cthe_0477 flagellar motor switch protein FliM. (328 aa)
Ccel_2042PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: cth:Cthe_0474 protein of unknown function DUF1078-like protein. (454 aa)
Ccel_2043TIGRFAM: flagellar operon protein; KEGG: cth:Cthe_0473 flagellar operon protein. (133 aa)
Ccel_2044Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein. (285 aa)
Ccel_2045PFAM: flagellar hook-length control protein; KEGG: cth:Cthe_0471 flagellar hook-length control protein. (510 aa)
Ccel_2046KEGG: cth:Cthe_0470 hypothetical protein. (289 aa)
Ccel_2047TIGRFAM: flagellar export protein FliJ; PFAM: flagellar FliJ protein; KEGG: cth:Cthe_0469 flagellar export protein FliJ. (155 aa)
Ccel_2048ATPase FliI/YscN; KEGG: cth:Cthe_0468 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; ATPase FliI/YscN; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase. (437 aa)
Ccel_2049PFAM: flagellar assembly protein FliH; KEGG: cth:Cthe_0467 flagellar biosynthesis/type III secretory pathway protein-like protein. (258 aa)
Ccel_2050TIGRFAM: flagellar motor switch protein FliG; KEGG: cth:Cthe_0466 flagellar motor switch protein G. (342 aa)
Ccel_2051TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; KEGG: cth:Cthe_0465 flagellar M-ring protein FliF. (523 aa)
fliETIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: cth:Cthe_0464 flagellar hook-basal body complex subunit FliE. (102 aa)
Ccel_2053TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_0463 flagellar basal-body rod protein FlgC. (147 aa)
Ccel_2054Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. (137 aa)
Ccel_3099KEGG: cth:Cthe_2622 hypothetical protein. (129 aa)
Ccel_3100PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_2621 protein of unknown function DUF1078-like protein. (270 aa)
Ccel_3101PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_2620 protein of unknown function DUF1078-like protein. (265 aa)
Ccel_3361KEGG: cth:Cthe_2166 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein. (373 aa)
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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