STRINGSTRING
Ccel_2351 Ccel_2351 Ccel_2352 Ccel_2352 Ccel_2353 Ccel_2353 Ccel_2355 Ccel_2355 Ccel_2356 Ccel_2356 Ccel_2357 Ccel_2357
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ccel_2351PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cpy:Cphy_3574 radical SAM domain-containing protein. (426 aa)
Ccel_2352PFAM: NUDIX hydrolase; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mgi:Mflv_5060 radical SAM domain-containing protein. (565 aa)
Ccel_2353PFAM: Radical SAM domain protein; KEGG: tme:Tmel_0507 radical SAM domain-containing protein. (327 aa)
Ccel_2355PFAM: protein of unknown function DUF214; KEGG: lmf:LMOf2365_1233 ABC transporter, permease protein. (1016 aa)
Ccel_2356PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpy:Cphy_2590 ABC transporter related. (233 aa)
Ccel_2357PFAM: regulatory protein TetR; KEGG: bha:BH0719 TetR/AcrR family transcriptional regulator. (190 aa)
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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