STRINGSTRING
Ccel_1921 Ccel_1921 Ccel_1923 Ccel_1923 aroQ aroQ Ccel_1926 Ccel_1926 Ccel_1927 Ccel_1927
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ccel_1921KEGG: cth:Cthe_0846 hypothetical protein. (134 aa)
Ccel_1923Peptidase M24; PFAM: creatinase; peptidase M24; KEGG: cth:Cthe_0848 peptidase M24; Belongs to the peptidase M24B family. (361 aa)
aroQ3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. (142 aa)
Ccel_1926PFAM: peptidase M18 aminopeptidase I; KEGG: cth:Cthe_0726 putative aminopeptidase 1. (476 aa)
Ccel_1927TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; KEGG: cth:Cthe_0724 HisJ family histidinol phosphate phosphatase; Belongs to the PHP hydrolase family. HisK subfamily. (265 aa)
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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