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Ccel_0139 Ccel_0139 uxuA uxuA uxaC uxaC Ccel_1670 Ccel_1670 Ccel_1671 Ccel_1671 Ccel_1672 Ccel_1672 Ccel_1673 Ccel_1673 uxuA-2 uxuA-2 Ccel_1675 Ccel_1675 uxaC-2 uxaC-2 Ccel_3191 Ccel_3191 Ccel_3192 Ccel_3192
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ccel_0139PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: mta:Moth_0429 mannitol dehydrogenase. (537 aa)
uxuAMannonate dehydratase; Catalyzes the dehydration of D-mannonate. (360 aa)
uxaCPFAM: Glucuronate isomerase; KEGG: bsu:BSU12300 glucuronate isomerase. (463 aa)
Ccel_1670PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: cpe:CPE0147 beta-D-glucuronidase; Belongs to the glycosyl hydrolase 2 family. (598 aa)
Ccel_1671PFAM: PfkB domain protein; KEGG: cpy:Cphy_0227 ribokinase-like domain-containing protein. (338 aa)
Ccel_1672TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: cpy:Cphy_0054 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase. (320 aa)
Ccel_1673PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cpe:CPE0149 D-mannonate oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (283 aa)
uxuA-2Mannonate dehydratase; Catalyzes the dehydration of D-mannonate. (348 aa)
Ccel_1675TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: cpe:CPE0153 glucuronide permease. (462 aa)
uxaC-2PFAM: Glucuronate isomerase; KEGG: csc:Csac_1949 glucuronate isomerase. (485 aa)
Ccel_3191PFAM: PfkB domain protein; KEGG: ote:Oter_4259 ribokinase-like domain-containing protein. (366 aa)
Ccel_3192TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: amt:Amet_1261 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase. (214 aa)
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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