STRINGSTRING
Ccel_0139 Ccel_0139 uxuA uxuA uxaC uxaC uxuA-2 uxuA-2 uxaC-2 uxaC-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
Ccel_0139PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: mta:Moth_0429 mannitol dehydrogenase. (537 aa)
uxuAMannonate dehydratase; Catalyzes the dehydration of D-mannonate. (360 aa)
uxaCPFAM: Glucuronate isomerase; KEGG: bsu:BSU12300 glucuronate isomerase. (463 aa)
uxuA-2Mannonate dehydratase; Catalyzes the dehydration of D-mannonate. (348 aa)
uxaC-2PFAM: Glucuronate isomerase; KEGG: csc:Csac_1949 glucuronate isomerase. (485 aa)
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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