STRINGSTRING
Ccel_0320 Ccel_0320 Ccel_0941 Ccel_0941 Ccel_0949 Ccel_0949 Ccel_0951 Ccel_0951 Ccel_0952 Ccel_0952 Ccel_0953 Ccel_0953 Ccel_0954 Ccel_0954 Ccel_1006 Ccel_1006 Ccel_1125 Ccel_1125 Ccel_2189 Ccel_2189 Ccel_2190 Ccel_2190 galT galT Ccel_3237 Ccel_3237 galK galK xylA xylA Ccel_3430 Ccel_3430 xylB xylB Ccel_3467 Ccel_3467 Ccel_3468 Ccel_3468 Ccel_3469 Ccel_3469 Ccel_3470 Ccel_3470
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ccel_0320YdaE; KEGG: dth:DICTH_0546 YdaE. (181 aa)
Ccel_0941Xylose isomerase domain protein TIM barrel; Involved in the biosynthesis of D-psicose. Catalyzes the reversible epimerization of D-fructose at the C3 position to yield D- psicose. The enzyme is highly specific for D-psicose and shows very low activity with D-tagatose. (293 aa)
Ccel_0949PFAM: FAD dependent oxidoreductase; KEGG: rle:RL3853 putative protein involved in invasion. (457 aa)
Ccel_0951KEGG: bcl:ABC3582 hypothetical protein. (432 aa)
Ccel_0952PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ssp:SSP0524 putative dehydrogenase. (359 aa)
Ccel_0953PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: scl:sce9297 putative zinc-binding dehydrogenase. (336 aa)
Ccel_0954PFAM: PfkB domain protein; KEGG: tpd:Teth39_0632 ribokinase-like domain-containing protein. (321 aa)
Ccel_1006PFAM: carbohydrate kinase FGGY; KEGG: mta:Moth_2025 xylulokinase; Belongs to the FGGY kinase family. (503 aa)
Ccel_1125Oxidoreductase domain protein; PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: cac:CAC1480 dehydrogenase. (321 aa)
Ccel_2189PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: amt:Amet_0590 alcohol dehydrogenase. (346 aa)
Ccel_2190PFAM: ROK family protein; KEGG: cbt:CLH_2695 ROK family protein. (374 aa)
galTPFAM: galactose-1-phosphate uridyl transferase domain protein; KEGG: tte:TTE1929 galactose-1-phosphate uridylyltransferase. (524 aa)
Ccel_3237TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cth:Cthe_0186 UDP-galactose 4-epimerase. (328 aa)
galKGalactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily. (397 aa)
xylATIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cdf:CD3064 xylose isomerase; Belongs to the xylose isomerase family. (439 aa)
Ccel_3430PFAM: ROK family protein; KEGG: csc:Csac_0695 ROK family protein. (399 aa)
xylBTIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: cdf:CD3065 xylulose kinase. (509 aa)
Ccel_3467TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; KEGG: cbt:CLH_3015 L-ribulose-5-phosphate 4-epimerase. (229 aa)
Ccel_3468PFAM: carbohydrate kinase FGGY; KEGG: cbe:Cbei_4452 carbohydrate kinase, FGGY. (535 aa)
Ccel_3469KEGG: csc:Csac_0877 L-fucose isomerase-like protein. (493 aa)
Ccel_3470PFAM: regulatory protein GntR HTH; periplasmic binding protein/LacI transcriptional regulator; KEGG: bld:BLi03256 hypothetical protein. (364 aa)
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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