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uxaC uxaC Ccel_0259 Ccel_0259 Ccel_0320 Ccel_0320 hisA hisA Ccel_1033 Ccel_1033 Ccel_1179 Ccel_1179 mtnA mtnA pgi pgi Ccel_1640 Ccel_1640 uxaC-2 uxaC-2 trpF trpF xylA xylA Ccel_3469 Ccel_3469
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
uxaCPFAM: Glucuronate isomerase; KEGG: bsu:BSU12300 glucuronate isomerase. (463 aa)
Ccel_0259TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: cth:Cthe_2597 ribose-5-phosphate isomerase. (149 aa)
Ccel_0320YdaE; KEGG: dth:DICTH_0546 YdaE. (181 aa)
hisATIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; KEGG: cth:Cthe_2887 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase. (236 aa)
Ccel_1033L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (465 aa)
Ccel_1179TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I; KEGG: cno:NT01CX_1588 mannose-6-phosphate isomerase, class I. (349 aa)
mtnATranslation initiation factor, aIF-2BI family; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). (364 aa)
pgiPFAM: phosphoglucose isomerase (PGI); KEGG: cth:Cthe_0217 glucose-6-phosphate isomerase; Belongs to the GPI family. (450 aa)
Ccel_1640TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: msu:MS0383 RpiB protein. (152 aa)
uxaC-2PFAM: Glucuronate isomerase; KEGG: csc:Csac_1949 glucuronate isomerase. (485 aa)
trpFPFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: rsd:TGRD_120 phosphoribosylanthranilate isomerase; Belongs to the TrpF family. (205 aa)
xylATIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cdf:CD3064 xylose isomerase; Belongs to the xylose isomerase family. (439 aa)
Ccel_3469KEGG: csc:Csac_0877 L-fucose isomerase-like protein. (493 aa)
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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