STRINGSTRING
Ccel_1013 Ccel_1013 Ccel_0154 Ccel_0154 Ccel_1004 Ccel_1004 Ccel_1431 Ccel_1431 Ccel_1439 Ccel_1439 Ccel_2109 Ccel_2109 Ccel_2354 Ccel_2354 Ccel_2455 Ccel_2455 Ccel_2577 Ccel_2577 Ccel_3243 Ccel_3243 Ccel_3412 Ccel_3412
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ccel_1013PFAM: glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: pin:Ping_2019 beta-D-galactosidase. (1033 aa)
Ccel_0154PFAM: glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: cpr:CPR_0750 beta-galactosidase. (1030 aa)
Ccel_1004PFAM: glycoside hydrolase family 31; KEGG: bvu:BVU_0491 alpha-glycosidase; Belongs to the glycosyl hydrolase 31 family. (791 aa)
Ccel_1431Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. (354 aa)
Ccel_1439Glycosyltransferase 36; PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: csc:Csac_1090 glycosyltransferase 36. (784 aa)
Ccel_2109Glycosyltransferase 36; PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: cth:Cthe_0275 cellobiose phosphorylase. (811 aa)
Ccel_2354Glycosyltransferase 36; PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: dth:DICTH_0484 N,N'-diacetylchitobiose phosphorylase. (796 aa)
Ccel_2455PFAM: glycoside hydrolase family 31; KEGG: csc:Csac_1354 alpha-xylosidase YicI; Belongs to the glycosyl hydrolase 31 family. (770 aa)
Ccel_2577PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: tex:Teth514_0980 putative carbohydrate binding. (2823 aa)
Ccel_3243PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: tex:Teth514_2202 kojibiose phosphorylase. (749 aa)
Ccel_3412Glycosyltransferase 36; PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: dth:DICTH_0484 N,N'-diacetylchitobiose phosphorylase. (824 aa)
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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