STRINGSTRING
Ccel_0927 Ccel_0927 Ccel_2284 Ccel_2284 Ccel_2173 Ccel_2173 Ccel_2077 Ccel_2077 Ccel_2062 Ccel_2062 Ccel_2061 Ccel_2061 Ccel_2022 Ccel_2022 Ccel_1490 Ccel_1490 Ccel_1034 Ccel_1034 Ccel_0803 Ccel_0803 Ccel_0708 Ccel_0708 sigA sigA Ccel_0400 Ccel_0400 Ccel_2635 Ccel_2635 Ccel_2734 Ccel_2734 Ccel_2846 Ccel_2846 Ccel_2862 Ccel_2862 Ccel_3300 Ccel_3300 Ccel_3319 Ccel_3319 Ccel_0228 Ccel_0228 Ccel_0375 Ccel_0375
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ccel_0927RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: lsp:Bsph_1728 RNA polymerase sigma factor SigX; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa)
Ccel_2284RNA polymerase, sigma 28 subunit, SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (249 aa)
Ccel_2173RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cdf:CD0677 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (160 aa)
Ccel_2077RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cth:Cthe_0890 ECF subfamily RNA polymerase sigma-24 factor. (197 aa)
Ccel_2062RNA polymerase, sigma 28 subunit, SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (243 aa)
Ccel_2061RNA polymerase, sigma 28 subunit, SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (257 aa)
Ccel_2022TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cth:Cthe_0495 RNA polymerase, sigma 28 subunit. (254 aa)
Ccel_1490KEGG: tte:TTE0428 hypothetical protein. (116 aa)
Ccel_1034Transcriptional regulator, DeoR family; PFAM: putative sugar-binding domain protein; KEGG: afl:Aflv_2782 transcriptional regulator of deoxyribonucleoside metabolism. (315 aa)
Ccel_0803RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: cth:Cthe_2731 ECF subfamily RNA polymerase sigma-24 factor. (184 aa)
Ccel_0708Putative helix-turn-helix protein YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. (118 aa)
sigARNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (359 aa)
Ccel_0400TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: cth:Cthe_2900 RNA polymerase, sigma 28 subunit. (249 aa)
Ccel_2635RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: cpy:Cphy_1094 ECF subfamily RNA polymerase sigma-24 factor. (170 aa)
Ccel_2734RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: efa:EF2290 ECF subfamily RNA polymerase sigma factor. (130 aa)
Ccel_2846Putative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; KEGG: ckl:CKL_2654 hypothetical protein. (137 aa)
Ccel_2862Putative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; KEGG: ckl:CKL_2666 hypothetical protein. (177 aa)
Ccel_3300RNA polymerase, sigma-24 subunit, ECF subfamily. (142 aa)
Ccel_3319RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-H factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: cth:Cthe_2059 RNA polymerase factor sigma-70. (214 aa)
Ccel_0228RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: csc:Csac_0467 ECF subfamily RNA polymerase sigma-24 factor. (180 aa)
Ccel_0375RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: dsy:DSY4418 hypothetical protein. (189 aa)
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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