STRINGSTRING
Ccel_0054 Ccel_0054 Ccel_1005 Ccel_1005 Ccel_1223 Ccel_1223 Ccel_1438 Ccel_1438 Ccel_1642 Ccel_1642 Ccel_1984 Ccel_1984 Ccel_1987 Ccel_1987 Ccel_2687 Ccel_2687 Ccel_2999 Ccel_2999 Ccel_3000 Ccel_3000 Ccel_3464 Ccel_3464 Ccel_3470 Ccel_3470
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ccel_0054KEGG: tte:TTE0289 periplasmic sugar-binding proteins. (352 aa)
Ccel_1005Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: csc:Csac_1338 alanine racemase. (336 aa)
Ccel_1223PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cbe:Cbei_4462 periplasmic binding protein/LacI transcriptional regulator. (342 aa)
Ccel_1438Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: mta:Moth_2024 LacI family transcription regulator. (337 aa)
Ccel_1642PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: vei:Veis_2044 periplasmic binding protein/LacI transcriptional regulator. (333 aa)
Ccel_1984PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bja:blr1123 ABC transporter sugar-binding protein. (348 aa)
Ccel_1987KEGG: amt:Amet_3799 putative solute-binding component of ABC transporter. (378 aa)
Ccel_2687KEGG: rle:RL3617 putative solute-binding component of ABC transporter. (359 aa)
Ccel_2999Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bcl:ABC0314 transcriptional regulator. (336 aa)
Ccel_3000Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cth:Cthe_2505 LacI family transcription regulator. (346 aa)
Ccel_3464PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: cac:CAC3553 LacI family transcription regulator. (347 aa)
Ccel_3470PFAM: regulatory protein GntR HTH; periplasmic binding protein/LacI transcriptional regulator; KEGG: bld:BLi03256 hypothetical protein. (364 aa)
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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