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Ccel_0043 Ccel_0043 Ccel_0047 Ccel_0047 Ccel_0048 Ccel_0048 Ccel_0258 Ccel_0258 secE secE rpoB rpoB rpoC rpoC tuf tuf Ccel_0343 Ccel_0343 Ccel_0360 Ccel_0360 Ccel_0411 Ccel_0411 Ccel_0422 Ccel_0422 Ccel_0507 Ccel_0507 secD secD secF secF Ccel_0583 Ccel_0583 Ccel_0584 Ccel_0584 Ccel_0608 Ccel_0608 Ccel_0690 Ccel_0690 Ccel_0693 Ccel_0693 celCCF celCCF Ccel_0735 Ccel_0735 secY secY rpoA rpoA Ccel_0908 Ccel_0908 Ccel_1068 Ccel_1068 Ccel_1118 Ccel_1118 Ccel_1170 Ccel_1170 Ccel_1191 Ccel_1191 Ccel_1192 Ccel_1192 Ccel_1247 Ccel_1247 Ccel_1248 Ccel_1248 Ccel_1385 Ccel_1385 Ccel_1386 Ccel_1386 Ccel_1429 Ccel_1429 Ccel_1430 Ccel_1430 secA secA Ccel_1497 Ccel_1497 Ccel_1515 Ccel_1515 Ccel_1517 Ccel_1517 Ccel_1519 Ccel_1519 Ccel_1648 Ccel_1648 Ccel_1657 Ccel_1657 Ccel_1661 Ccel_1661 Ccel_1766 Ccel_1766 Ccel_1767 Ccel_1767 Ccel_1768 Ccel_1768 Ccel_1769 Ccel_1769 Ccel_1770 Ccel_1770 Ccel_1779 Ccel_1779 rpoZ rpoZ Ccel_1963 Ccel_1963 Ccel_2006 Ccel_2006 Ccel_2101 Ccel_2101 Ccel_2191 Ccel_2191 Ccel_2209 Ccel_2209 Ccel_2211 Ccel_2211 Ccel_2253 Ccel_2253 secA-2 secA-2 Ccel_2482 Ccel_2482 Ccel_2490 Ccel_2490 Ccel_2528 Ccel_2528 Ccel_2572 Ccel_2572 Ccel_2893 Ccel_2893 Ccel_3020 Ccel_3020 Ccel_3351 Ccel_3351
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ccel_0043Ferritin Dps family protein; Iron-storage protein. (171 aa)
Ccel_0047PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cth:Cthe_2964 binding-protein-dependent transport systems inner membrane component. (331 aa)
Ccel_0048PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cth:Cthe_2965 binding-protein-dependent transport systems inner membrane component. (307 aa)
Ccel_0258PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: cth:Cthe_2596 protein tyrosine phosphatase. (168 aa)
secEPreprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. (76 aa)
rpoBDNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1246 aa)
rpoCDNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1169 aa)
tufTranslation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (400 aa)
Ccel_0343PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC1558 ABC-type transport system,membrane ATPase component. (544 aa)
Ccel_0360PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cth:Cthe_1945 thioredoxin-disulfide reductase. (291 aa)
Ccel_0411TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: deh:cbdb_A1621 major facilitator family transporter. (531 aa)
Ccel_0422PFAM: major facilitator superfamily MFS_1; KEGG: aoe:Clos_0840 major facilitator transporter. (410 aa)
Ccel_0507KEGG: cth:Cthe_1336 hypothetical protein. (198 aa)
secDProtein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (441 aa)
secFProtein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (327 aa)
Ccel_0583PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_2144 ABC transporter related. (583 aa)
Ccel_0584PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_2145 ABC transporter related. (582 aa)
Ccel_0608PFAM: extracellular solute-binding protein family 5; KEGG: cth:Cthe_0910 extracellular solute-binding protein. (549 aa)
Ccel_0690Manganese and iron superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (223 aa)
Ccel_0693KEGG: cth:Cthe_3195 hypothetical protein. (137 aa)
celCCFGlycoside hydrolase family 48; Probable endoglucanase involved in the degradation of cellulose or related beta-glucans; Belongs to the glycosyl hydrolase 48 (cellulase L) family. (722 aa)
Ccel_0735PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; cellulosome protein dockerin type I; KEGG: cth:Cthe_2360 glycoside hydrolase family protein. (757 aa)
secYPreprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. (430 aa)
rpoADNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (315 aa)
Ccel_0908PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa1178 L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein (MFS). (383 aa)
Ccel_1068PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: dsy:DSY4671 hypothetical protein. (137 aa)
Ccel_1118PFAM: major facilitator superfamily MFS_1; KEGG: ckl:CKL_2256 transporter protein. (406 aa)
Ccel_1170KEGG: cth:Cthe_0055 hypothetical protein. (166 aa)
Ccel_1191PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bwe:BcerKBAB4_2432 ABC transporter related. (755 aa)
Ccel_1192PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bwe:BcerKBAB4_2433 ABC transporter related. (625 aa)
Ccel_1247PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_0829 ABC transporter, ATP-binding protein. (611 aa)
Ccel_1248PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cau:Caur_2439 ABC transporter related. (604 aa)
Ccel_1385PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_3300 ABC transporter related. (579 aa)
Ccel_1386PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_3299 ABC transporter related. (629 aa)
Ccel_1429PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: lin:lin0156 hypothetical protein. (581 aa)
Ccel_1430PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: efa:EF1593 ABC transporter, ATP-binding/permease protein. (592 aa)
secAPreprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. (912 aa)
Ccel_1497KEGG: bsu:BSU39290 hypothetical protein. (144 aa)
Ccel_1515Hypothetical protein; KEGG: bba:Bd2582 cell wall surface anchor family protein. (873 aa)
Ccel_1517KEGG: sfu:Sfum_1625 hypothetical protein. (895 aa)
Ccel_1519KEGG: predicted protein. (1910 aa)
Ccel_1648PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; cellulosome protein dockerin type I; KEGG: cth:Cthe_2760 glycoside hydrolase family protein. (949 aa)
Ccel_1657KEGG: dsy:DSY1199 hypothetical protein. (147 aa)
Ccel_1661PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; Redoxin domain protein; Thioredoxin domain; KEGG: cth:Cthe_1947 redoxin. (192 aa)
Ccel_1766PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpr:CPR_2256 oligopeptide ABC transporter, permease component. (468 aa)
Ccel_1767PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC0177 oligopeptide transport permease protein. (321 aa)
Ccel_1768PFAM: extracellular solute-binding protein family 5; KEGG: tpd:Teth39_0202 extracellular solute-binding protein. (579 aa)
Ccel_1769PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: aoe:Clos_1946 ABC transporter related. (614 aa)
Ccel_1770PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: aoe:Clos_1945 ABC transporter related. (610 aa)
Ccel_1779TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: tex:Teth514_0924 thioredoxin reductase. (308 aa)
rpoZDNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (68 aa)
Ccel_1963PFAM: regulatory protein AsnC/Lrp family; KEGG: dsy:DSY2399 hypothetical protein. (160 aa)
Ccel_2006Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (367 aa)
Ccel_2101TIGRFAM: phosphate binding protein; KEGG: aoe:Clos_1116 phosphate binding protein. (313 aa)
Ccel_2191KEGG: ssa:SSA_1346 hypothetical protein. (236 aa)
Ccel_2209PFAM: regulatory protein AsnC/Lrp family; KEGG: cth:Cthe_0362 AsnC family transcriptional regulator. (159 aa)
Ccel_2211TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: cth:Cthe_0360 thioredoxin; Belongs to the thioredoxin family. (108 aa)
Ccel_2253Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. (83 aa)
secA-2SecA DEAD domain protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. (769 aa)
Ccel_2482TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ckl:CKL_1650 transporter protein. (493 aa)
Ccel_2490Hypothetical protein; KEGG: gur:Gura_0755 coagulation factor 5/8 type domain-containing protein. (448 aa)
Ccel_2528TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: cac:CAC3368 permease. (590 aa)
Ccel_2572PFAM: SEC-C motif domain protein; KEGG: cth:Cthe_0060 hypothetical protein. (164 aa)
Ccel_2893Chitinase II; SMART: leucine-rich repeat-containing protein typical subtype; chitinase II; KEGG: cpy:Cphy_1815 leucine-rich repeat-containing protein. (587 aa)
Ccel_3020KEGG: hypothetical protein. (1250 aa)
Ccel_3351PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1412 hypothetical protein. (579 aa)
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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