(5 nodes) Carbohydrate binding domain network (Ruminiclostridium cellulolyticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Ccel_0732	PFAM: glycoside hydrolase family 9; cellulosome protein dockerin type I; Carbohydrate-binding CenC domain protein; glycoside hydrolase family 9 domain protein Ig domain protein; KEGG: cac:CAC0561 cellulase CelE-like protein; Belongs to the glycosyl hydrolase 9 (cellulase E) family. (885 aa)
	Ccel_2392	PFAM: glycoside hydrolase family 9; cellulosome protein dockerin type I; Carbohydrate-binding CenC domain protein; glycoside hydrolase family 9 domain protein Ig domain protein; KEGG: cac:CAC0561 cellulase CelE-like protein. (874 aa)
	Ccel_2320	PFAM: glycoside hydrolase family 10; S-layer domain protein; Carbohydrate-binding CenC domain protein; Carbohydrate-binding family 9; KEGG: ote:Oter_1101 endo-1,4-beta-xylanase. (1050 aa)
	Ccel_2319	PFAM: glycoside hydrolase family 10; S-layer domain protein; Carbohydrate-binding CenC domain protein; Carbohydrate-binding family 9; KEGG: swo:Swol_0293 hypothetical protein. (1495 aa)
	Ccel_1236	Protein of unknown function DUF1680; PFAM: cellulosome protein dockerin type I; Carbohydrate-binding CenC domain protein; protein of unknown function DUF1680; SMART: beta and gamma crystallin; KEGG: sus:Acid_1242 hypothetical protein. (955 aa)

Your Current Organism:

Ruminiclostridium cellulolyticum

NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Ccel_2319	Ccel_2320	PFAM: glycoside hydrolase family 10; S-layer domain protein; Carbohydrate-binding CenC domain protein; Carbohydrate-binding family 9; KEGG: swo:Swol_0293 hypothetical protein.	PFAM: glycoside hydrolase family 10; S-layer domain protein; Carbohydrate-binding CenC domain protein; Carbohydrate-binding family 9; KEGG: ote:Oter_1101 endo-1,4-beta-xylanase.	0.512
Ccel_2320	Ccel_2319	PFAM: glycoside hydrolase family 10; S-layer domain protein; Carbohydrate-binding CenC domain protein; Carbohydrate-binding family 9; KEGG: ote:Oter_1101 endo-1,4-beta-xylanase.	PFAM: glycoside hydrolase family 10; S-layer domain protein; Carbohydrate-binding CenC domain protein; Carbohydrate-binding family 9; KEGG: swo:Swol_0293 hypothetical protein.	0.512