STRINGSTRING
Ccel_2353 Ccel_2353 Ccel_0534 Ccel_0534 Ccel_2352 Ccel_2352 Ccel_0122 Ccel_0122
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ccel_2353PFAM: Radical SAM domain protein; KEGG: tme:Tmel_0507 radical SAM domain-containing protein. (327 aa)
Ccel_0534PFAM: Radical SAM domain protein; KEGG: cth:Cthe_0906 radical SAM family protein. (447 aa)
Ccel_2352PFAM: NUDIX hydrolase; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mgi:Mflv_5060 radical SAM domain-containing protein. (565 aa)
Ccel_0122PFAM: Radical SAM domain protein; KEGG: cbk:CLL_A1020 radical SAM. (289 aa)
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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