STRINGSTRING
Ccel_0139 Ccel_0139 uxuA uxuA uxaC uxaC Ccel_0320 Ccel_0320 Ccel_1006 Ccel_1006 Ccel_1007 Ccel_1007 Ccel_1009 Ccel_1009 Ccel_1029 Ccel_1029 Ccel_1030 Ccel_1030 Ccel_1033 Ccel_1033 Ccel_1246 Ccel_1246 Ccel_1265 Ccel_1265 Ccel_1537 Ccel_1537 Ccel_1670 Ccel_1670 uxuA-2 uxuA-2 uxaC-2 uxaC-2 Ccel_2189 Ccel_2189 Ccel_2243 Ccel_2243 Ccel_3407 Ccel_3407 xylA xylA xylB xylB Ccel_3467 Ccel_3467
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ccel_0139PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: mta:Moth_0429 mannitol dehydrogenase. (537 aa)
uxuAMannonate dehydratase; Catalyzes the dehydration of D-mannonate. (360 aa)
uxaCPFAM: Glucuronate isomerase; KEGG: bsu:BSU12300 glucuronate isomerase. (463 aa)
Ccel_0320YdaE; KEGG: dth:DICTH_0546 YdaE. (181 aa)
Ccel_1006PFAM: carbohydrate kinase FGGY; KEGG: mta:Moth_2025 xylulokinase; Belongs to the FGGY kinase family. (503 aa)
Ccel_1007PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cbl:CLK_2861 putative L-iditol 2-dehydrogenase. (348 aa)
Ccel_1009PFAM: aldo/keto reductase; KEGG: sus:Acid_2860 aldehyde reductase. (337 aa)
Ccel_1029PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cbl:CLK_2861 putative L-iditol 2-dehydrogenase. (356 aa)
Ccel_1030PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pac:PPA0918 putative zinc-binding sorbitol dehydrogenase. (346 aa)
Ccel_1033L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (465 aa)
Ccel_1246PFAM: Pectinesterase; cellulosome protein dockerin type I; KEGG: cth:Cthe_2949 pectinesterase. (560 aa)
Ccel_1265PFAM: dihydrodipicolinate synthetase; KEGG: cdf:CD3000 putative dihydrodipicolinate synthase; Belongs to the DapA family. (297 aa)
Ccel_1537PFAM: ribulose-phosphate 3-epimerase; KEGG: cth:Cthe_0576 ribulose-5-phosphate 3-epimerase. (222 aa)
Ccel_1670PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: cpe:CPE0147 beta-D-glucuronidase; Belongs to the glycosyl hydrolase 2 family. (598 aa)
uxuA-2Mannonate dehydratase; Catalyzes the dehydration of D-mannonate. (348 aa)
uxaC-2PFAM: Glucuronate isomerase; KEGG: csc:Csac_1949 glucuronate isomerase. (485 aa)
Ccel_2189PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: amt:Amet_0590 alcohol dehydrogenase. (346 aa)
Ccel_2243PFAM: Pectate lyase/Amb allergen; cellulosome protein dockerin type I; KEGG: cth:Cthe_2179 pectate lyase/Amb allergen. (462 aa)
Ccel_3407TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cth:Cthe_2183 UDP-glucose pyrophosphorylase. (290 aa)
xylATIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cdf:CD3064 xylose isomerase; Belongs to the xylose isomerase family. (439 aa)
xylBTIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: cdf:CD3065 xylulose kinase. (509 aa)
Ccel_3467TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; KEGG: cbt:CLH_3015 L-ribulose-5-phosphate 4-epimerase. (229 aa)
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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