STRINGSTRING
Ccel_0154 Ccel_0154 Ccel_1002 Ccel_1002 Ccel_1013 Ccel_1013 Ccel_1237 Ccel_1237 Ccel_1239 Ccel_1239 Ccel_1597 Ccel_1597 Ccel_3426 Ccel_3426
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ccel_0154PFAM: glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: cpr:CPR_0750 beta-galactosidase. (1030 aa)
Ccel_1002PFAM: glycoside hydrolase family 4; KEGG: bcl:ABC0412 alpha-galactosidase. (489 aa)
Ccel_1013PFAM: glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: pin:Ping_2019 beta-D-galactosidase. (1033 aa)
Ccel_1237Carbohydrate binding family 6; PFAM: glycoside hydrolase clan GH-D; cellulosome protein dockerin type I; Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: cak:Caul_2129 alpha-galactosidase. (604 aa)
Ccel_1239Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; SMART: cellulose binding type IV; KEGG: cth:Cthe_2197 carbohydrate-binding family 6 protein; Belongs to the glycosyl hydrolase 2 family. (1015 aa)
Ccel_1597PFAM: glycoside hydrolase clan GH-D; cellulosome protein dockerin type I; KEGG: aba:Acid345_1677 alpha-galactosidase. (471 aa)
Ccel_3426PFAM: glycoside hydrolase family 4; KEGG: cbe:Cbei_4359 glycoside hydrolase, family 4. (441 aa)
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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