STRINGSTRING
Ccel_0743 Ccel_0743 Ccel_1350 Ccel_1350 Ccel_1719 Ccel_1719 Ccel_1890 Ccel_1890 Ccel_1938 Ccel_1938 Ccel_2890 Ccel_2890 Ccel_2941 Ccel_2941 Ccel_2990 Ccel_2990 Ccel_3223 Ccel_3223 Ccel_3453 Ccel_3453
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ccel_0743PFAM: cell wall hydrolase/autolysin; KEGG: aoe:Clos_2218 cell wall hydrolase/autolysin. (249 aa)
Ccel_1350PFAM: cell wall hydrolase/autolysin; copper amine oxidase domain protein; KEGG: cth:Cthe_0185 cell wall hydrolase/autolysin. (529 aa)
Ccel_1719PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; KEGG: csc:Csac_2307 2-alkenal reductase. (374 aa)
Ccel_1890PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; KEGG: cth:Cthe_1286 peptidase S1 and S6, chymotrypsin/Hap. (521 aa)
Ccel_1938PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; KEGG: csc:Csac_2307 2-alkenal reductase. (377 aa)
Ccel_2890PFAM: cell wall hydrolase/autolysin; KEGG: cth:Cthe_1804 cell wall hydrolase/autolysin. (262 aa)
Ccel_2941PFAM: cell wall hydrolase/autolysin; KEGG: cth:Cthe_1037 cell wall hydrolase/autolysin. (250 aa)
Ccel_2990PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: ckl:CKL_2696 protease. (428 aa)
Ccel_3223PFAM: cell wall hydrolase/autolysin; KEGG: esi:Exig_1130 cell wall hydrolase/autolysin. (257 aa)
Ccel_3453KEGG: gtn:GTNG_3084 hypothetical protein. (113 aa)
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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