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deoC1_2 deoC1_2 pdxK pdxK sbcD_2 sbcD_2 deoC deoC xpt xpt deoC1_1 deoC1_1 pncB2 pncB2 iphP iphP serS serS hemB hemB pgi pgi apt apt lacZ lacZ sbcD_1 sbcD_1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
deoC1_2Deoxyribose-phosphate aldolase 1. (241 aa)
pdxKPyridoxine kinase; Belongs to the pyridoxine kinase family. (273 aa)
sbcD_2Nuclease sbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (399 aa)
deoCDeoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (216 aa)
xptXanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis. (207 aa)
deoC1_1Deoxyribose-phosphate aldolase 1. (241 aa)
pncB2Nicotinate phosphoribosyltransferase 2; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family. (481 aa)
iphPTyrosine-protein phosphatase precursor. (240 aa)
serSSerine--tRNA ligase. (428 aa)
hemBDelta-aminolevulinic acid dehydratase; Belongs to the ALAD family. (321 aa)
pgiGlucose-6-phosphate isomerase; Belongs to the GPI family. (527 aa)
aptAdenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. (185 aa)
lacZBeta-galactosidase. (1557 aa)
sbcD_1Nuclease sbcCD subunit D. (403 aa)
Your Current Organism:
Anaerobutyricum hallii
NCBI taxonomy Id: 39488
Other names: A. hallii, ATCC 27751, DSM 3353, Eubacterium hallii, VPI B4-27
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