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| | mnmC | Conserved hypothetical protein; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the N-terminal section; belongs to the methyltransferase superfamily. tRNA (mnm(5)s(2)U34)-methyltransferase family. (657 aa) |
| | BAG42035.1 | ECF subfamily RNA polymerase sigma-70 factor; COG1595: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog, Sinorhizobium meliloti; KEGG, K03088; Belongs to the sigma-70 factor family. (289 aa) |
| | BAG42044.1 | ECF subfamily RNA polymerase sigma-70 factor; COG1595: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog, Mesorhizobium loti; KEGG, K03088; Belongs to the sigma-70 factor family. ECF subfamily. (172 aa) |
| | rnpA | Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (135 aa) |
| | thdF | tRNA modification GTPase; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. (464 aa) |
| | fmt | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. (327 aa) |
| | sun | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. (467 aa) |
| | cca | tRNA nucleotidyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. (413 aa) |
| | ttcA | Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. (331 aa) |
| | BAG42253.1 | prolyl-tRNA synthetase-like domain protein; COG2606: Uncharacterized conserved protein, Ralstonia solanacearum. (168 aa) |
| | mraW | S-adenosyl-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (313 aa) |
| | nudH | Putative (di)nucleoside polyphosphate hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. (215 aa) |
| | proS | prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...] (578 aa) |
| | BAG42428.1 | Conserved hypothetical protein. (214 aa) |
| | rnb | COG0557: Exoribonuclease R, Ralstonia solanacearum; KEGG, K01147. (690 aa) |
| | BAG42451.1 | Ribonuclease T1; COG4290: Guanyl-specific ribonuclease Sa, Ralstonia solanacearum; KEGG, K01167. (143 aa) |
| | BAG42453.1 | Conserved hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (254 aa) |
| | leuS | COG0495: Leucyl-tRNA synthetase, Ralstonia solanacearum; KEGG, K01869; Belongs to the class-I aminoacyl-tRNA synthetase family. (864 aa) |
| | tyrS | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily. (413 aa) |
| | dtd | D-tyrosyl-tRNA deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (152 aa) |
| | dusB | tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. (354 aa) |
| | trmU | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. (381 aa) |
| | BAG42525.1 | COG0116: Predicted N6-adenine-specific DNA methylase, Ralstonia solanacearum; KEGG, K07444; Belongs to the methyltransferase superfamily. (432 aa) |
| | tgt | Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...] (399 aa) |
| | BAG42554.1 | PilT-like protein. (129 aa) |
| | pcnB | poly(A) polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (512 aa) |
| | miaA | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (325 aa) |
| | BAG42667.1 | ECF subfamily RNA polymerase sigma-70 factor; COG1595: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog, Ralstonia solanacearum; KEGG, K03088; Belongs to the sigma-70 factor family. ECF subfamily. (171 aa) |
| | yqqF | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. (149 aa) |
| | apaH | Bis(5'-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family. (278 aa) |
| | trmB | tRNA (guanine-N7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (254 aa) |
| | nusB | N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (145 aa) |
| | serS | seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). (433 aa) |
| | rph | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (246 aa) |
| | BAG42792.1 | Conserved hypothetical protein; COG1561: Uncharacterized stress-induced protein, Ralstonia solanacearum. (307 aa) |
| | rpoZ | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (67 aa) |
| | BAG42890.1 | Conserved hypothetical protein. (357 aa) |
| | rimM | 16S rRNA processing protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. (223 aa) |
| | trmD | tRNA (guanine-N1-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. (264 aa) |
| | orn | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. (211 aa) |
| | rne | Ribonuclease; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. (1054 aa) |
| | rluC | Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (334 aa) |
| | BAG43008.1 | ECF subfamily RNA polymerase sigma-70 factor; COG1595: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog, Ralstonia solanacearum; KEGG, K03088; Belongs to the sigma-70 factor family. ECF subfamily. (199 aa) |
| | rnc | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (406 aa) |
| | BAG43071.1 | Conserved hypothetical protein. (508 aa) |
| | rnhA | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (147 aa) |
| | BAG43158.1 | COG1534: Predicted RNA-binding protein containing KH domain, possibly ribosomal protein, Ralstonia solanacearum; KEGG, K07574. (176 aa) |
| | ftsJ | Cell division protein methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. (220 aa) |
| | BAG43200.1 | ECF subfamily sigma-24 subunit; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa) |
| | fecI | ECF subfamily RNA polymerase sigma-70 factor; COG1595: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog, Pseudomonas aeruginosa; KEGG, K03088; Belongs to the sigma-70 factor family. ECF subfamily. (169 aa) |
| | glnS | COG0008: Glutamyl- and glutaminyl-tRNA synthetases, Ralstonia solanacearum; KEGG, K01886. (569 aa) |
| | alaS | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (874 aa) |
| | BAG43296.1 | Conserved hypothetical protein; COG0425: Predicted redox protein, regulator of disulfide bond formation, Ralstonia solanacearum; Belongs to the sulfur carrier protein TusA family. (75 aa) |
| | valS | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. (955 aa) |
| | thrS | threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr). (635 aa) |
| | pheS | COG0016: Phenylalanyl-tRNA synthetase alpha subunit, Ralstonia solanacearum; KEGG, K01888. (337 aa) |
| | pheT | COG0072: Phenylalanyl-tRNA synthetase beta subunit, Ralstonia solanacearum; KEGG, K06878. (809 aa) |
| | rluB | Ribosomal large subunit pseudouridine synthase B; COG1187: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases, Ralstonia solanacearum; KEGG, K06178; Belongs to the pseudouridine synthase RsuA family. (554 aa) |
| | nusA | N utilization substance protein A; Participates in both transcription termination and antitermination. (491 aa) |
| | rbfA | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. (132 aa) |
| | truB | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. (310 aa) |
| | rnb-2 | Exoribonuclease II; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. (818 aa) |
| | yjfH | TrmH family RNA methyltransferase; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. (247 aa) |
| | dusA | tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. (344 aa) |
| | selU | tRNA 2-selenouridine synthase; KEGG, K06917; Belongs to the SelU family. (377 aa) |
| | BAG43558.1 | ECF subfamily RNA polymerase sigma-70 factor; COG1595: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog, Pseudomonas aeruginosa; KEGG, K03088; Belongs to the sigma-70 factor family. ECF subfamily. (213 aa) |
| | BMULJ_01703 | Prolyl-tRNA synthetase-like domain protein; Frame shift-inactivated endoribonuclease. (162 aa) |
| | rimO | Putative 2-methylthioadenine synthetase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. (453 aa) |
| | rluD | Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (400 aa) |
| | hisS | COG0124: Histidyl-tRNA synthetase, Ralstonia solanacearum; KEGG, K01891. (446 aa) |
| | rlmN | Cfr family radical SAM enzyme; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. (378 aa) |
| | rlmD | SAM-dependent methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. (465 aa) |
| | rpoS | RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. (361 aa) |
| | rho | Transcription termination factor; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (420 aa) |
| | fmt-2 | COG0223: Methionyl-tRNA formyltransferase, Ralstonia solanacearum; KEGG, K00604. (315 aa) |
| | dnaB | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (460 aa) |
| | priB | Primosomal replication protein N; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family. (99 aa) |
| | BAG43765.1 | ECF subfamily RNA polymerase sigma-70 factor; COG1595: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog, Ralstonia solanacearum; KEGG, K03088; Belongs to the sigma-70 factor family. ECF subfamily. (213 aa) |
| | BAG43800.1 | bolA-like protein; COG0271: Stress-induced morphogen (activity unknown), Ralstonia solanacearum; Belongs to the BolA/IbaG family. (104 aa) |
| | tadA | Cytidine/deoxycytidylate deaminase family protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (159 aa) |
| | spoU | TrmH family RNA methyltransferase; COG0566: rRNA methylases, Ralstonia solanacearum; KEGG, K03437. (260 aa) |
| | rnhA-2 | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (210 aa) |
| | rluF | Ribosomal large subunit pseudouridine synthase F; COG1187: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases, Ralstonia solanacearum; KEGG, K06182; Belongs to the pseudouridine synthase RsuA family. (612 aa) |
| | BAG43932.1 | Putative protease; COG1214: Inactive homolog of metal-dependent proteases, putative molecular chaperone, Ralstonia solanacearum. (255 aa) |
| | deaD | COG0513: Superfamily II DNA and RNA helicases, Ralstonia solanacearum; DeaD protein; KEGG, K05592; Belongs to the DEAD box helicase family. (505 aa) |
| | gltX | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (469 aa) |
| | mesJ | Cell cycle protein; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. (468 aa) |
| | cysS | COG0215: Cysteinyl-tRNA synthetase, Ralstonia solanacearum; KEGG, K01882; Belongs to the class-I aminoacyl-tRNA synthetase family. (465 aa) |
| | lasT | tRNA/rRNA methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. (276 aa) |
| | trpS | tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. (400 aa) |
| | sua5 | COG0009: Putative translation factor (SUA5), Ralstonia solanacearum; KEGG, K07566; Belongs to the SUA5 family. (210 aa) |
| | lysU | COG1190: Lysyl-tRNA synthetase (class II), Ralstonia solanacearum; KEGG, K04567; Belongs to the class-II aminoacyl-tRNA synthetase family. (508 aa) |
| | hrpA | COG1643: HrpA-like helicases, Ralstonia solanacearum; HrpA protein; KEGG, K03578. (1378 aa) |
| | rlmJ | Conserved hypothetical protein; Specifically methylates the adenine in position 2030 of 23S rRNA. (281 aa) |
| | pnp | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (715 aa) |
| | BAG44147.1 | ECF subfamily RNA polymerase sigma-70 factor; COG1595: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog, Ralstonia solanacearum; Belongs to the sigma-70 factor family. ECF subfamily. (187 aa) |
| | BAG44159.1 | COG2872: Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain, Pseudomonas aeruginosa; KEGG, K07050; contains related to alanyl-tRNA synthetase with HxxxH domain. (243 aa) |
| | ybeA | Conserved hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. (156 aa) |
| | rng | COG1530: Ribonucleases G and E, Ralstonia solanacearum; KEGG, K08301. (490 aa) |
| | BAG44196.1 | Rhodanese-like domain protein; COG1054: Predicted sulfurtransferase, Ralstonia solanacearum; KEGG, K07146; Belongs to the UPF0176 family. (285 aa) |
| | gltX-2 | glutamyl-tRNA synthetase; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily. (298 aa) |
| | deaD-2 | COG0513: Superfamily II DNA and RNA helicases, Ralstonia solanacearum; DeaD protein; KEGG, K05592; Belongs to the DEAD box helicase family. (487 aa) |
| | BAG44223.1 | COG4679: Phage-related protein, Xylella fastidiosa 9a5c. (119 aa) |
| | metG | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. (722 aa) |
| | rsuA | Ribosomal small subunit pseudouridine synthase A; COG1187: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases, Ralstonia solanacearum; KEGG, K06183; Belongs to the pseudouridine synthase RsuA family. (238 aa) |
| | sun-2 | Sun protein; COG0144: tRNA and rRNA cytosine-C5-methylases, Ralstonia solanacearum; KEGG, K03500; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (421 aa) |
| | ileS | isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. (945 aa) |
| | rluE | Ribosomal large subunit pseudouridine synthase E; COG1187: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases, Neisseria meningitidis MC58; KEGG, K06181; Belongs to the pseudouridine synthase RsuA family. (192 aa) |
| | ebsC | Putative transcription regulator; COG2606: Uncharacterized conserved protein, Ralstonia solanacearum; KEGG, K03976; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. (163 aa) |
| | queG | Putative 4Fe-4S cluster-binding ferredoxin protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family. (404 aa) |
| | BAG44417.1 | Putative hydrolase; COG0802: Predicted ATPase or kinase, Ralstonia solanacearum; KEGG, K06925. (184 aa) |
| | BAG44422.1 | ThiF family protein; COG1179: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1, Ralstonia solanacearum. (285 aa) |
| | sua5-2 | Putative translation factor; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. (342 aa) |
| | deaD-3 | ATP-dependent RNA helicase; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. (480 aa) |
| | miaB | Bifunctional enzyme; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. (457 aa) |
| | ybeY | Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (258 aa) |
| | glyQ | COG0752: Glycyl-tRNA synthetase, alpha subunit, Ralstonia solanacearum; KEGG, K01878. (334 aa) |
| | glyS | COG0751: Glycyl-tRNA synthetase, beta subunit, Ralstonia solanacearum; KEGG, K01879. (699 aa) |
| | ksgA | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (275 aa) |
| | aspS | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. (600 aa) |
| | rpoN | RNA polymerase sigma54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (501 aa) |
| | BAG44650.1 | COG0742: N6-adenine-specific methylase, Ralstonia solanacearum; KEGG, K00599. (204 aa) |
| | rpoH | RNA polymerase sigma-32 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. (311 aa) |
| | cspR | TrmH family RNA methyltransferase; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide. (156 aa) |
| | argS | COG0018: Arginyl-tRNA synthetase, Ralstonia solanacearum; KEGG, K01887. (598 aa) |
| | rpoA | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (325 aa) |
| | rpoC | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1413 aa) |
| | rpoB | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1368 aa) |
| | nusG | Transcriptional antiterminator; Participates in transcription elongation, termination and antitermination. (185 aa) |
| | fliA | RNA polymerase sigma factor for flagellar operon; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (244 aa) |
| | BAG44995.1 | Putative lipoprotein. (125 aa) |
| | vapC | PilT-like protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (133 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (757 aa) |
| | gidB | Glucose inhibited division protein B; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. (228 aa) |
| | gidA | Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. (656 aa) |
| | dbpA | COG0513: Superfamily II DNA and RNA helicases, Ralstonia solanacearum; DbpA protein; KEGG, K05591; Belongs to the DEAD box helicase family. (464 aa) |
| | BAG45461.1 | COG4941: Predicted RNA polymerase sigma factor containing a TPR repeat domain, Ralstonia solanacearum; Belongs to the sigma-70 factor family. (422 aa) |
| | BAG45513.1 | Probable bacteriophage protein. (931 aa) |
| | gcp | O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. (346 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (622 aa) |
| | rpoD | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (804 aa) |
| | truA | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (270 aa) |
| | selA | L-seryl-tRNA seleniumtransferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (479 aa) |
| | rpoS-2 | RNA polymerase sigma 38 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (525 aa) |
| | BAG45971.1 | COG0172: Seryl-tRNA synthetase, Agrobacterium tumefaciens strain C58. (325 aa) |
| | BAG46296.1 | Conserved hypothetical protein. (109 aa) |
| | stbB | Plasmid stability protein-like protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (151 aa) |
| | vapC-2 | PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (131 aa) |
| | rna | COG3719: Ribonuclease I, Sinorhizobium meliloti; KEGG, K01169; Belongs to the RNase T2 family. (243 aa) |
| | BAG46989.1 | COG2337: Growth inhibitor, Escherichia coli O157:H7; KEGG, K07171. (116 aa) |
| | BAG47381.1 | RNA polymerase sigma 28 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (612 aa) |
| | BAG47509.1 | ECF subfamily RNA polymerase sigma-70 factor; COG1595: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog, Mesorhizobium loti; KEGG, K03088; Belongs to the sigma-70 factor family. ECF subfamily. (234 aa) |
| | BAG47626.1 | COG2337: Growth inhibitor, Escherichia coli O157:H7; KEGG, K07171. (116 aa) |
| | relE | Cytotoxic translational repressor of toxin-antitoxin stability system. (104 aa) |
| | BAG47822.1 | COG1793: ATP-dependent DNA ligase, Agrobacterium tumefaciens strain C58. (927 aa) |
| | rpoN-2 | RNA polymerase sigma54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (475 aa) |
| | BAG47965.1 | Putative metal-dependent phosphohydrolase. (189 aa) |
