Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BAG42772.1 | dnaN | BMULJ_00812 | BMULJ_00069 | COG2256: ATPase related to the helicase subunit of the Holliday junction resolvase, Ralstonia solanacearum; KEGG, K07478. | DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...] | 0.671 |
| BAG42772.1 | polA | BMULJ_00812 | BMULJ_03689 | COG2256: ATPase related to the helicase subunit of the Holliday junction resolvase, Ralstonia solanacearum; KEGG, K07478. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.687 |
| BAG42772.1 | polB | BMULJ_00812 | BMULJ_03262 | COG2256: ATPase related to the helicase subunit of the Holliday junction resolvase, Ralstonia solanacearum; KEGG, K07478. | COG0417: DNA polymerase elongation subunit (family B), Pseudomonas aeruginosa; KEGG, K02336. | 0.473 |
| BAG44302.1 | parA3 | BMULJ_02408 | BMULJ_05360 | COG1192: ATPases involved in chromosome partitioning, Ralstonia solanacearum. | COG1192: ATPases involved in chromosome partitioning, Ralstonia solanacearum; ParA3 protein. | 0.470 |
| BAG44609.1 | parA4 | BMULJ_02719 | BMULJ_05370 | COG1192: ATPases involved in chromosome partitioning, Pseudomonas aeruginosa; KEGG, K03496. | COG1192: ATPases involved in chromosome partitioning, Ralstonia solanacearum; ParA4 protein. | 0.573 |
| BAG44946.1 | dnaE | BMULJ_03071 | BMULJ_02300 | Conserved hypothetical protein. | COG0587: DNA polymerase III, alpha subunit, Ralstonia solanacearum; KEGG, K02337. | 0.784 |
| BAG44946.1 | dnaE-2 | BMULJ_03071 | BMULJ_02779 | Conserved hypothetical protein. | DNA polymerase III alpha subunit; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.784 |
| BAG44946.1 | dnaN | BMULJ_03071 | BMULJ_00069 | Conserved hypothetical protein. | DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...] | 0.956 |
| BAG44946.1 | dnaX | BMULJ_03071 | BMULJ_01797 | Conserved hypothetical protein. | COG2812: DNA polymerase III, gamma/tau subunits, Ralstonia solanacearum; KEGG, K02343. | 0.950 |
| BAG44946.1 | holA | BMULJ_03071 | BMULJ_00507 | Conserved hypothetical protein. | COG1466: DNA polymerase III, delta subunit, Ralstonia solanacearum; KEGG, K02340. | 0.758 |
| BAG44946.1 | holB | BMULJ_03071 | BMULJ_01861 | Conserved hypothetical protein. | DNA polymerase III delta' subunit; COG0470: ATPase involved in DNA replication, Ralstonia solanacearum; KEGG, K02341. | 0.627 |
| BAG44946.1 | holC | BMULJ_03071 | BMULJ_02429 | Conserved hypothetical protein. | COG2927: DNA polymerase III, chi subunit, Ralstonia solanacearum; KEGG, K02339. | 0.597 |
| BAG44946.1 | ligA | BMULJ_03071 | BMULJ_01995 | Conserved hypothetical protein. | NAD-dependent DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.465 |
| BAG44946.1 | polA | BMULJ_03071 | BMULJ_03689 | Conserved hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.666 |
| BAG45513.1 | dnaB | BMULJ_03641 | BMULJ_01839 | Probable bacteriophage protein. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.986 |
| BAG45513.1 | dnaG | BMULJ_03641 | BMULJ_03702 | Probable bacteriophage protein. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.540 |
| BAG45513.1 | dnaQ | BMULJ_03641 | BMULJ_00847 | Probable bacteriophage protein. | COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases, Neisseria meningitidis Z2491; KEGG, K02342. | 0.474 |
| BAG45513.1 | polA | BMULJ_03641 | BMULJ_03689 | Probable bacteriophage protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.918 |
| BAG47461.1 | dnaN | BMULJ_05634 | BMULJ_00069 | Metallo-beta-lactamase family protein; COG1236: Predicted exonuclease of the beta-lactamase fold involved in RNA processing, Ralstonia solanacearum; KEGG, K07576. | DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...] | 0.466 |
| BAG47461.1 | ligA | BMULJ_05634 | BMULJ_01995 | Metallo-beta-lactamase family protein; COG1236: Predicted exonuclease of the beta-lactamase fold involved in RNA processing, Ralstonia solanacearum; KEGG, K07576. | NAD-dependent DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.563 |
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