STRINGSTRING
Galf_0116 Galf_0116 Galf_0755 Galf_0755 Galf_0762 Galf_0762 Galf_1014 Galf_1014 Galf_2731 Galf_2731
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Galf_0116Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-4 domain protein; MCP methyltransferase CheR-type; PAS fold domain protein; GGDEF domain containing protein; CheB methylesterase; KEGG: app:CAP2UW1_2118 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; MCP methyltransferase CheR-type. (1561 aa)
Galf_0755Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: aba:Acid345_4059 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAC repeat-containing protein; PAS domain containing protein; histidine kinase HAMP region domain protein; Hpt domain protein. (1407 aa)
Galf_0762Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: dar:Daro_3006 PAS; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; Hpt domain protein. (918 aa)
Galf_1014KEGG: slt:Slit_0547 response regulator receiver modulated CheW protein; PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver. (314 aa)
Galf_2731TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; KEGG: dar:Daro_0729 PAS; SMART: chemotaxis sensory transducer; PAS domain containing protein; PAC repeat-containing protein; histidine kinase HAMP region domain protein. (925 aa)
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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