STRINGSTRING
Galf_0277 Galf_0277 lptA lptA Galf_0279 Galf_0279 Galf_2522 Galf_2522 Galf_2523 Galf_2523
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Galf_0277PFAM: protein of unknown function DUF1239; KEGG: slt:Slit_0439 protein of unknown function DUF1239. (191 aa)
lptALipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. (178 aa)
Galf_0279KEGG: slt:Slit_0437 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase. (240 aa)
Galf_2522PFAM: permease YjgP/YjgQ family protein; KEGG: slt:Slit_2408 permease YjgP/YjgQ family protein. (358 aa)
Galf_2523PFAM: permease YjgP/YjgQ family protein; KEGG: slt:Slit_2409 permease YjgP/YjgQ family protein. (377 aa)
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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