(37 nodes) Aminoglycan biosynthetic process, and Reproduction network (Pseudomonas mohnii)

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second shell of interactors

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proteins of unknown 3D structure

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Predicted Interactions

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Your Input:
	SEC05383.1	Murein L,D-transpeptidase YcbB/YkuD. (583 aa)
	SEC05419.1	L,D-transpeptidase catalytic domain. (234 aa)
	SEC08916.1	D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4). (500 aa)
	ftsZ	Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. (397 aa)
	ftsA	Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. (419 aa)
	ftsQ	Cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly. (288 aa)
	ddl	D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. (327 aa)
	murC	UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. (486 aa)
	murG	UDP-N-acetylglucosamine-N- acetylmuramylpentapeptide N-acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. (356 aa)
	ftsW	Cell division-specific peptidoglycan biosynthesis regulator FtsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily. (405 aa)
	murD	UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. (448 aa)
	mraY	Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. (360 aa)
	murF	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. (455 aa)
	murE	UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. (487 aa)
	ftsI	Peptidoglycan synthetase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. (580 aa)
	ftsL	Cell division protein FtsL; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. (97 aa)
	rsmH	16S rRNA (cytosine1402-N4)-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (315 aa)
	mraZ	MraZ protein; Belongs to the MraZ family. (151 aa)
	ddl-2	D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. (364 aa)
	SEC59105.1	Cell division protein FtsN. (237 aa)
	mtgA	Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. (240 aa)
	mpl	UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily. (449 aa)
	rlmH	23S rRNA (pseudouridine1915-N3)-methyltransferase; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. (155 aa)
	mrdA	Peptidoglycan glycosyltransferase /cell elongation-specific peptidoglycan D,D-transpeptidase; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. (631 aa)
	mrdB	Cell elongation-specific peptidoglycan biosynthesis regulator RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. (380 aa)
	SEC98354.1	Membrane-bound lytic murein transglycosylase B. (336 aa)
	rlpA	Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (335 aa)
	SEC98411.1	Penicillin-binding protein 6. Serine peptidase. MEROPS family S11; Belongs to the peptidase S11 family. (385 aa)
	SEC98529.1	Muramoyltetrapeptide carboxypeptidase. (316 aa)
	SED03796.1	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). (774 aa)
	murA	UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. (421 aa)
	SED14316.1	L,D-transpeptidase catalytic domain. (167 aa)
	SED15506.1	Membrane carboxypeptidase (penicillin-binding protein). (1039 aa)
	SED21214.1	CubicO group peptidase, beta-lactamase class C family. (381 aa)
	murB	UDP-N-acetylmuramate dehydrogenase; Cell wall formation. (339 aa)
	SED36514.1	L,D-transpeptidase ErfK/SrfK. (323 aa)
	mrdA-2	Peptidoglycan glycosyltransferase /cell elongation-specific peptidoglycan D,D-transpeptidase; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. (630 aa)

Your Current Organism:

Pseudomonas mohnii

NCBI taxonomy Id: 395600
Other names: Arthrobacter sp. BDR2P2B2-M, CCUG 53115, DSM 18327, P. mohnii, Pseudomonas mohnii Camara et al. 2007, strain IpA-2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEC05383.1	SEC05419.1	SAMN05216205_1348	SAMN05216205_1349	Murein L,D-transpeptidase YcbB/YkuD.	L,D-transpeptidase catalytic domain.	0.850
SEC05383.1	SEC08916.1	SAMN05216205_1348	SAMN05216205_1446	Murein L,D-transpeptidase YcbB/YkuD.	D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4).	0.703
SEC05383.1	SEC98411.1	SAMN05216205_1348	SAMN05216205_3828	Murein L,D-transpeptidase YcbB/YkuD.	Penicillin-binding protein 6. Serine peptidase. MEROPS family S11; Belongs to the peptidase S11 family.	0.660
SEC05383.1	SED03796.1	SAMN05216205_1348	SAMN05216205_4010	Murein L,D-transpeptidase YcbB/YkuD.	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	0.666
SEC05383.1	SED14316.1	SAMN05216205_1348	SAMN05216205_4342	Murein L,D-transpeptidase YcbB/YkuD.	L,D-transpeptidase catalytic domain.	0.511
SEC05383.1	SED15506.1	SAMN05216205_1348	SAMN05216205_4375	Murein L,D-transpeptidase YcbB/YkuD.	Membrane carboxypeptidase (penicillin-binding protein).	0.588
SEC05383.1	SED36514.1	SAMN05216205_1348	SAMN05216205_5027	Murein L,D-transpeptidase YcbB/YkuD.	L,D-transpeptidase ErfK/SrfK.	0.554
SEC05383.1	ftsI	SAMN05216205_1348	SAMN05216205_2273	Murein L,D-transpeptidase YcbB/YkuD.	Peptidoglycan synthetase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.	0.702
SEC05383.1	mrdA	SAMN05216205_1348	SAMN05216205_3824	Murein L,D-transpeptidase YcbB/YkuD.	Peptidoglycan glycosyltransferase /cell elongation-specific peptidoglycan D,D-transpeptidase; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.	0.659
SEC05383.1	mrdA-2	SAMN05216205_1348	SAMN05216205_5134	Murein L,D-transpeptidase YcbB/YkuD.	Peptidoglycan glycosyltransferase /cell elongation-specific peptidoglycan D,D-transpeptidase; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.	0.659
SEC05383.1	mtgA	SAMN05216205_1348	SAMN05216205_3454	Murein L,D-transpeptidase YcbB/YkuD.	Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.	0.687
SEC05419.1	SEC05383.1	SAMN05216205_1349	SAMN05216205_1348	L,D-transpeptidase catalytic domain.	Murein L,D-transpeptidase YcbB/YkuD.	0.850
SEC05419.1	SEC08916.1	SAMN05216205_1349	SAMN05216205_1446	L,D-transpeptidase catalytic domain.	D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4).	0.734
SEC05419.1	SEC98411.1	SAMN05216205_1349	SAMN05216205_3828	L,D-transpeptidase catalytic domain.	Penicillin-binding protein 6. Serine peptidase. MEROPS family S11; Belongs to the peptidase S11 family.	0.600
SEC05419.1	SED03796.1	SAMN05216205_1349	SAMN05216205_4010	L,D-transpeptidase catalytic domain.	Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	0.461
SEC05419.1	SED15506.1	SAMN05216205_1349	SAMN05216205_4375	L,D-transpeptidase catalytic domain.	Membrane carboxypeptidase (penicillin-binding protein).	0.461
SEC05419.1	SED21214.1	SAMN05216205_1349	SAMN05216205_4554	L,D-transpeptidase catalytic domain.	CubicO group peptidase, beta-lactamase class C family.	0.432
SEC05419.1	ftsI	SAMN05216205_1349	SAMN05216205_2273	L,D-transpeptidase catalytic domain.	Peptidoglycan synthetase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.	0.463
SEC05419.1	mpl	SAMN05216205_1349	SAMN05216205_3807	L,D-transpeptidase catalytic domain.	UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.	0.568
SEC05419.1	mrdA	SAMN05216205_1349	SAMN05216205_3824	L,D-transpeptidase catalytic domain.	Peptidoglycan glycosyltransferase /cell elongation-specific peptidoglycan D,D-transpeptidase; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.	0.526