(40 nodes) ClpP/crotonase-like domain superfamily network (Pseudomonas mohnii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SEB69425.1	Short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (261 aa)
	SEB60609.1	Enoyl-CoA hydratase/carnithine racemase. (261 aa)
	SEB61937.1	enoyl-CoA hydratase. (302 aa)
	SEB61996.1	enoyl-CoA hydratase. (250 aa)
	SEB64496.1	Short chain enoyl-CoA hydratase /Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (263 aa)
	SEB65689.1	Enoyl-CoA hydratase/carnithine racemase. (368 aa)
	SEB65758.1	Short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (257 aa)
	SEB66376.1	enoyl-CoA hydratase. (270 aa)
	SEB74995.1	Inner membrane peptidase. Serine peptidase. MEROPS family S49. (340 aa)
	SEB97842.1	2-oxoglutaroyl-CoA hydrolase. (267 aa)
	accD	acetyl-CoA carboxylase carboxyltransferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (306 aa)
	fadB	Short chain enoyl-CoA hydratase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. (715 aa)
	SEC10752.1	enoyl-CoA hydratase. (229 aa)
	SEC10921.1	Short chain enoyl-CoA hydratase. (714 aa)
	SEC13156.1	C-terminal processing peptidase-1. Serine peptidase. MEROPS family S41A; Belongs to the peptidase S41A family. (693 aa)
	SEC34702.1	Enoyl-CoA hydratase/carnithine racemase. (249 aa)
	SEC61791.1	Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. (439 aa)
	SEC86873.1	Malonate decarboxylase beta subunit. (283 aa)
	SEC86911.1	Malonate decarboxylase gamma subunit. (267 aa)
	accA	acetyl-CoA carboxylase carboxyltransferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (315 aa)
	SED25181.1	Enoyl-CoA hydratase/carnithine racemase. (370 aa)
	SED29190.1	Protease-4. (329 aa)
	SED37461.1	Enoyl-CoA hydratase/carnithine racemase. (263 aa)
	SED38920.1	isohexenylglutaconyl-CoA hydratase. (265 aa)
	SED38988.1	geranyl-CoA carboxylase beta subunit. (538 aa)
	SED41443.1	Enoyl-CoA hydratase. (260 aa)
	SED42073.1	Short chain enoyl-CoA hydratase /Enoyl-CoA hydratase. (263 aa)
	SED42118.1	Short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (257 aa)
	clpP	ATP-dependent Clp protease proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (211 aa)
	SED46278.1	methylglutaconyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (271 aa)
	SED46312.1	3-methylcrotonyl-CoA carboxylase beta subunit. (535 aa)
	SED56096.1	ATP-dependent protease ClpP, protease subunit. (185 aa)
	menB	1,4-Dihydroxy-2-naphthoyl-CoA synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily. (260 aa)
	SED58783.1	Short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)
	SED58818.1	3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family. (286 aa)
	SED63204.1	enoyl-CoA hydratase. (266 aa)
	SED64493.1	enoyl-CoA hydratase. (272 aa)
	SED64638.1	enoyl-CoA hydratase. (264 aa)
	SED64703.1	Enoyl-CoA hydratase/carnithine racemase. (259 aa)
	SED65730.1	crotonobetainyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)

Your Current Organism:

Pseudomonas mohnii

NCBI taxonomy Id: 395600
Other names: Arthrobacter sp. BDR2P2B2-M, CCUG 53115, DSM 18327, P. mohnii, Pseudomonas mohnii Camara et al. 2007, strain IpA-2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEB60609.1	SEB61937.1	SAMN05216205_0095	SAMN05216205_0139	Enoyl-CoA hydratase/carnithine racemase.	enoyl-CoA hydratase.	0.848
SEB60609.1	SEB65689.1	SAMN05216205_0095	SAMN05216205_0256	Enoyl-CoA hydratase/carnithine racemase.	Enoyl-CoA hydratase/carnithine racemase.	0.627
SEB60609.1	SEB66376.1	SAMN05216205_0095	SAMN05216205_0275	Enoyl-CoA hydratase/carnithine racemase.	enoyl-CoA hydratase.	0.518
SEB60609.1	SEC10752.1	SAMN05216205_0095	SAMN05216205_1500	Enoyl-CoA hydratase/carnithine racemase.	enoyl-CoA hydratase.	0.467
SEB60609.1	SEC10921.1	SAMN05216205_0095	SAMN05216205_1504	Enoyl-CoA hydratase/carnithine racemase.	Short chain enoyl-CoA hydratase.	0.510
SEB60609.1	SED25181.1	SAMN05216205_0095	SAMN05216205_4686	Enoyl-CoA hydratase/carnithine racemase.	Enoyl-CoA hydratase/carnithine racemase.	0.590
SEB60609.1	SED38988.1	SAMN05216205_0095	SAMN05216205_5094	Enoyl-CoA hydratase/carnithine racemase.	geranyl-CoA carboxylase beta subunit.	0.490
SEB60609.1	SED42073.1	SAMN05216205_0095	SAMN05216205_5182	Enoyl-CoA hydratase/carnithine racemase.	Short chain enoyl-CoA hydratase /Enoyl-CoA hydratase.	0.831
SEB60609.1	SED46312.1	SAMN05216205_0095	SAMN05216205_5303	Enoyl-CoA hydratase/carnithine racemase.	3-methylcrotonyl-CoA carboxylase beta subunit.	0.490
SEB60609.1	SED58818.1	SAMN05216205_0095	SAMN05216205_5642	Enoyl-CoA hydratase/carnithine racemase.	3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.595
SEB60609.1	SED63204.1	SAMN05216205_0095	SAMN05216205_5767	Enoyl-CoA hydratase/carnithine racemase.	enoyl-CoA hydratase.	0.854
SEB60609.1	SED64638.1	SAMN05216205_0095	SAMN05216205_5808	Enoyl-CoA hydratase/carnithine racemase.	enoyl-CoA hydratase.	0.844
SEB60609.1	SED64703.1	SAMN05216205_0095	SAMN05216205_5810	Enoyl-CoA hydratase/carnithine racemase.	Enoyl-CoA hydratase/carnithine racemase.	0.800
SEB60609.1	SED65730.1	SAMN05216205_0095	SAMN05216205_5840	Enoyl-CoA hydratase/carnithine racemase.	crotonobetainyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.427
SEB60609.1	fadB	SAMN05216205_0095	SAMN05216205_1394	Enoyl-CoA hydratase/carnithine racemase.	Short chain enoyl-CoA hydratase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.	0.564
SEB60609.1	menB	SAMN05216205_0095	SAMN05216205_5638	Enoyl-CoA hydratase/carnithine racemase.	1,4-Dihydroxy-2-naphthoyl-CoA synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.	0.476
SEB61937.1	SEB60609.1	SAMN05216205_0139	SAMN05216205_0095	enoyl-CoA hydratase.	Enoyl-CoA hydratase/carnithine racemase.	0.848
SEB61937.1	SEB61996.1	SAMN05216205_0139	SAMN05216205_0141	enoyl-CoA hydratase.	enoyl-CoA hydratase.	0.964
SEB61937.1	SEB64496.1	SAMN05216205_0139	SAMN05216205_0220	enoyl-CoA hydratase.	Short chain enoyl-CoA hydratase /Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.849
SEB61937.1	SEB65689.1	SAMN05216205_0139	SAMN05216205_0256	enoyl-CoA hydratase.	Enoyl-CoA hydratase/carnithine racemase.	0.839